GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-05-03 03:48:52, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_074058               1036 bp    mRNA    linear   INV 22-NOV-2023
DEFINITION  Caenorhabditis elegans 7TM GPCR serpentine receptor class x (Srx)
            domain-containing protein (srx-10), partial mRNA.
ACCESSION   NM_074058
VERSION     NM_074058.4
DBLINK      BioProject: PRJNA158
KEYWORDS    RefSeq.
SOURCE      Caenorhabditis elegans
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
            Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
            Caenorhabditis.
REFERENCE   1  (bases 1 to 1036)
  AUTHORS   Sulson,J.E. and Waterston,R.
  CONSRTM   Caenorhabditis elegans Sequencing Consortium
  TITLE     Genome sequence of the nematode C. elegans: a platform for
            investigating biology
  JOURNAL   Science 282 (5396), 2012-2018 (1998)
   PUBMED   9851916
  REMARK    Erratum:[Science 1999 Jan 1;283(5398):35]
REFERENCE   2  (bases 1 to 1036)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-NOV-2023) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1036)
  AUTHORS   WormBase.
  CONSRTM   WormBase Consortium
  TITLE     Direct Submission
  JOURNAL   Submitted (29-OCT-2023) WormBase Group, European Bioinformatics
            Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org
REFERENCE   4  (bases 1 to 1036)
  AUTHORS   Sulson,J.E. and Waterston,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger
            Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute
            at Washington University, St. Louis, MO 63110, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by WormBase. This
            record is derived from an annotated genomic sequence (NC_003283).
            
            On Sep 4, 2019 this sequence version replaced NM_074058.3.
            COMPLETENESS: incomplete on the 5' end.
FEATURES             Location/Qualifiers
     source          1..1036
                     /organism="Caenorhabditis elegans"
                     /mol_type="mRNA"
                     /strain="Bristol N2"
                     /db_xref="taxon:6239"
                     /chromosome="V"
     gene            <1..1036
                     /gene="srx-10"
                     /locus_tag="CELE_R10D12.4"
                     /db_xref="GeneID:187761"
                     /db_xref="WormBase:WBGene00005901"
     CDS             1..948
                     /gene="srx-10"
                     /locus_tag="CELE_R10D12.4"
                     /standard_name="R10D12.4"
                     /note="Partially confirmed by transcript evidence"
                     /codon_start=1
                     /product="7TM GPCR serpentine receptor class x (Srx)
                     domain-containing protein"
                     /protein_id="NP_506459.3"
                     /db_xref="EnsemblGenomes-Gn:WBGene00005901"
                     /db_xref="EnsemblGenomes-Tr:R10D12.4"
                     /db_xref="GeneID:187761"
                     /db_xref="GOA:Q9XVK3"
                     /db_xref="InterPro:IPR019430"
                     /db_xref="UniProtKB/TrEMBL:Q9XVK3"
                     /db_xref="WormBase:WBGene00005901"
                     /translation="
MFKTAAGYFFFQLCLIGFVINMGVLVPLRRVQKNGDKNCVYLIAIVTILNDNINLLVNLCYFAPSIISDSYILADSPEKLGPMLMTRISHFSWYNTIFVMIVMALNRMTLVVLNKPNIFTKQRVLTYFFISSILSFSKVVFDVFLIPCCLVLMDHKKYGWTYYNPKNIKNWGELIDTIMEVGIFTATLLCYVIIFIKIRISNNSVEQSIDSKHFQKLRARERSVAVQFALVSIFSIISFASFKVVPMIFGKLNTESNIISPICFAVHCCANGCIYMFMNEEVKDELLKKIFKHNVVHTESNNPNGVPAEDPQLFF"
     misc_feature    31..744
                     /gene="srx-10"
                     /locus_tag="CELE_R10D12.4"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; Region: 7tm_GPCRs; cl28897"
                     /db_xref="CDD:452889"
     misc_feature    367..444
                     /gene="srx-10"
                     /locus_tag="CELE_R10D12.4"
                     /note="TM helix 4 [structural motif]; Region: TM helix 4"
                     /db_xref="CDD:410626"
     misc_feature    517..579
                     /gene="srx-10"
                     /locus_tag="CELE_R10D12.4"
                     /note="TM helix 5 [structural motif]; Region: TM helix 5"
                     /db_xref="CDD:410626"
     misc_feature    655..738
                     /gene="srx-10"
                     /locus_tag="CELE_R10D12.4"
                     /note="TM helix 6 [structural motif]; Region: TM helix 6"
                     /db_xref="CDD:410626"
     misc_feature    769..837
                     /gene="srx-10"
                     /locus_tag="CELE_R10D12.4"
                     /note="TM helix 7 [structural motif]; Region: TM helix 7"
                     /db_xref="CDD:410626"
ORIGIN      
atgttcaaaacggctgccggctacttcttctttcagttatgtttgatcggctttgtaatcaatatgggagtccttgtccctctgagaagagttcagaaaaatggagataaaaactgtgtttacttgattgccatagtaacgattttgaatgataacatcaatttgttggtcaatctatgctattttgccccatcaattatttcagatagctacattcttgctgattcccctgaaaaactcggaccaatgctaatgacaagaatatcgcatttcagttggtacaacaccattttcgtaatgattgtaatggcattaaatcgaatgacactagttgttttaaacaaacctaacatcttcacaaaacagcgtgttctaacctactttttcatttcttcaattttatctttttccaaagtggttttcgatgtcttcctgattccatgctgtttggtgcttatggatcataaaaaatatggatggacttattacaatccaaaaaatataaaaaattggggagaattaattgacacaattatggaagttggaatttttacagcgacactcttatgctatgttataattttcataaaaatccgaatttcaaataactctgtggaacagtcaattgactcaaaacattttcaaaaacttcgtgctcgagaacgatcggttgcggtacaattcgctttggtttcaattttctcaattatcagttttgcgtcattcaaagtggttccaatgatttttggtaaactgaatactgaaagtaatattatcagtccaatttgttttgctgttcactgttgtgccaatggatgtatctacatgtttatgaatgaagaggtgaaagacgaattattgaagaaaatattcaagcacaatgtggttcacacggaatccaataatccaaatggagtgccagcagaagatccccaattatttttttgaagagctttgacaagctcagtatgtgatgttatctttggtttatttttgcctatttaattttaataaataaccatcaaaaagaacaaat
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]