2024-05-18 21:18:45, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_070961 3655 bp mRNA linear INV 22-NOV-2023 DEFINITION Caenorhabditis elegans Piwi-like protein ergo-1 (ergo-1), mRNA. ACCESSION NM_070961 VERSION NM_070961.10 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 3655) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282 (5396), 2012-2018 (1998) PUBMED 9851916 REMARK Erratum:[Science 1999 Jan 1;283(5398):35] REFERENCE 2 (bases 1 to 3655) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (22-NOV-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3655) AUTHORS WormBase. CONSRTM WormBase Consortium TITLE Direct Submission JOURNAL Submitted (29-OCT-2023) WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 4 (bases 1 to 3655) AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003283). On Feb 2, 2021 this sequence version replaced NM_070961.9. FEATURES Location/Qualifiers source 1..3655 /organism="Caenorhabditis elegans" /mol_type="mRNA" /strain="Bristol N2" /db_xref="taxon:6239" /chromosome="V" gene 1..3655 /gene="ergo-1" /locus_tag="CELE_R09A1.1" /db_xref="GeneID:178602" /db_xref="WormBase:WBGene00019971" CDS 11..3376 /gene="ergo-1" /locus_tag="CELE_R09A1.1" /standard_name="R09A1.1a" /note="Confirmed by transcript evidence" /codon_start=1 /product="Piwi-like protein ergo-1" /protein_id="NP_503362.2" /db_xref="EnsemblGenomes-Gn:WBGene00019971" /db_xref="EnsemblGenomes-Tr:R09A1.1a" /db_xref="GeneID:178602" /db_xref="GOA:O61931" /db_xref="InterPro:IPR003100" /db_xref="InterPro:IPR003165" /db_xref="InterPro:IPR012337" /db_xref="InterPro:IPR036085" /db_xref="InterPro:IPR036397" /db_xref="UniProtKB/Swiss-Prot:O61931" /db_xref="WormBase:WBGene00019971" /translation="
MSYNNGGGGGGGGYRNDRDDRYHNNDRQNYRSSDQGRSGYNDDRRDNRYDDRRGSNNDRGCYDQHDRRGSSNDDRRGYRGYNQGGGGYQQQYSQDARYGSNQRNDNYGNNRGSHGGANMYSQNGGNRGGGGGRVGGGRTAAGMSNPGDLVGGADQPIHSVSKKSLRHNAQEFAVRPKTMVQDKGLGQKTTLLTNHTLVQLPQEPITLHVFNIEVFINGKSSNKRELCGPRFWEILKENKPTFGMPNQYIFNDVNMMWSTNKLRQSEGRTNNRRMNFVWKYVKQIKFGGNIEDEETMQLLSTLIDAIATQRARLPLAPPKYTVFKRLTYLICEEAYEPELPDVSLCHKLRIGTDARVGVSIAIRTNLRAGITACFDLGHTLFTRPAYPLVRLLCDIIEHSVVLDEAFEMKYDAALRACNVSDENLRVMTQILTKMTLQLSTETGDYVGEDGEVIVRPAPTIRNPGRNFKFVGLGAPADRYYFTSDGVELTVADYYLQKYNIRLRYPNLPCVLKKAPEQCGNKHSAMPLELVSYIVVPTRYGGFTMPDMRADMINKTTYTAQQRGKLLQHIIAQKSLSGIEPPVSNNDDYMKKHKLVMKREPIRVKATILPPPTLVYGDSVFHDEHHIGEWEAVTHDPPRQVLDGAVFRRKLYKSSEQPLMKRLMGSILLIQSPRQCRDFDYNQQGYHAIMRAIEDSGQPVLWADENKHSAVIQGELQFNQNQHGIEVIEQFLQNIKSTIGEYERDGEVIVPIVFAVFQARATVYSGNNNEYNDYNVLKYLADNKYGIHTQGILEKSLGVVGPSPKNCALTRLMVEKVLGKVGTTHRKLERGGAHKTWTIFTDPAKPTLVLGIDVSHPSTRDRETGNVLQKMSAATVVGNIDLDVTEFRASSRIQDTGVECLIDFSKEIDERIGEFIDHTGKRPAHIVVYRDGLSEGDFQKYLFEERVCIEERCLKIDTSFQPSITYIVVTKRHHTQFFLEDPSQGYESQGYNVLPGTLIEDAVTTNKYYDFFLSTQIGNEGCFRPTHYYVLHDTWTGKPDSFWPTVTHALTYNFCRSTTTVALPAPVLYAHLAAKRAKETLDGINTYKSVNNIYCDLESFGDLCEVNKDMNVNEKLEGMTFV"
misc_feature 1271..1681 /gene="ergo-1" /locus_tag="CELE_R09A1.1" /note="This domain is named PAZ after the proteins Piwi Argonaut and Zwille; Region: PAZ; smart00949" /db_xref="CDD:198017" misc_feature order(1409..1411,1451..1453,1478..1480,1490..1492, 1544..1546,1577..1579,1583..1585) /gene="ergo-1" /locus_tag="CELE_R09A1.1" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1772..3250 /gene="ergo-1" /locus_tag="CELE_R09A1.1" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2327..2329,2339..2341,2375..2386,2393..2395, 2432..2434,2441..2443,2453..2455,2465..2467) /gene="ergo-1" /locus_tag="CELE_R09A1.1" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2564..2566,2570..2572,2798..2800,3218..3220) /gene="ergo-1" /locus_tag="CELE_R09A1.1" /note="active site" /db_xref="CDD:240015" ORIGIN
actaacaaaaatgagctataacaacggcggcggcggcggtggtggtggctatcgaaacgatcgtgacgatcgctaccataacaacgatcggcaaaattaccgcagcagtgaccaaggtcgctccggatacaacgacgatcgtcgggacaatcgctacgatgatcgtcgcggctccaacaacgatcgtggctgctacgatcaacatgatcgtcgtggatcctccaacgatgatcgtagaggttatcgtggatacaaccagggtggtggaggatatcaacagcaatacagtcaggatgccagatatggatccaatcagagaaatgacaattatggaaataatcgtggaagtcacggcggcgcgaacatgtacagccaaaacggtggaaaccgcggaggaggaggaggacgtgtcggtggtggccgaaccgctgccggtatgtcgaatcctggagatctcgtcggaggtgccgaccagccgatccattcagtttcgaaaaagtcgctcagacacaacgcccaggagtttgcagtccggccgaaaacaatggtccaggataagggtctcggccagaagacgacacttttgacgaatcacacgttggtgcaactcccgcaggagcccatcacgcttcacgtcttcaatattgaagtatttattaatggaaagtctagcaataagcgagaactttgtgggccacgattttgggaaattttgaaggagaataagcccacttttggcatgccaaatcagtacatcttcaatgatgtgaatatgatgtggtcgacgaataagctgagacaatccgagggaagaactaataaccggagaatgaatttcgtttggaaatatgtgaaacaaatcaagtttggaggaaatattgaggatgaggagaccatgcagcttttgtcaacacttattgatgcgattgcaacgcagagagctcgcttgccacttgccccaccaaagtacactgtgttcaaaagattaacatatctaatttgcgaagaagcgtacgaacccgagcttccggatgtgtcactgtgtcataaactgagaattggtacagacgcgagagttggagtttcgattgctattcgcacaaatctgagagccggaatcactgcatgctttgatcttggtcacacactgttcacacgtccagcctacccactggttcgtctcctctgcgacatcatcgagcacagtgttgtcctcgatgaagcctttgagatgaagtatgatgctgctctcagagcatgtaatgtttccgacgagaatcttcgagtcatgactcaaatcttgacaaaaatgacgctccagctgtcaactgaaactggcgactatgtcggtgaggacggagaagtgattgttcgtccggctccaacaatccgtaatcctggacggaatttcaagtttgtcgggctcggagctccggccgatcgatattacttcacttctgatggagttgagttgaccgtcgccgactactacctccaaaagtataacattcggcttcgctatccaaatttaccgtgtgtcctgaaaaaagcgccggaacagtgtggaaataagcattcggcgatgccgttggaactcgtcagctacatagtcgttccgacgagatacggaggatttacgatgcccgatatgagggcagatatgatcaataagactacgtatacagctcagcaacgtggaaagcttcttcaacatatcattgctcagaagtcgctgtcgggaatcgaaccgcccgtgtcgaacaacgatgattacatgaaaaagcataaacttgtcatgaaaagggagccgatcagagttaaagccacaatcctaccacctccaactctggtttatggtgattctgtattccacgatgagcatcatatcggagaatgggaagctgttactcatgatccaccgagacaagttttggatggtgctgtgtttcggagaaaactctataagtcttctgagcagccgctcatgaagcgtctcatgggctcgattcttctgattcaatcgccgagacaatgtagagatttcgattacaatcagcaaggatatcacgcaatcatgagagccatcgaagacagtggtcaaccagtgttgtgggctgacgagaataagcattcggccgtgatccagggagagctccaatttaatcaaaatcagcatggaatcgaagtaattgagcaattcctccaaaatatcaaatcgacaattggcgagtacgaacgagacggcgaagtcatcgttccgattgtttttgccgttttccaggcgagagccactgtgtattctggcaacaataatgagtataatgattataatgttctcaagtatcttgccgataacaagtatggaatccacactcaaggaattctcgagaaaagtctcggagttgttgggccttcaccaaagaattgcgccctaacccgattgatggtggaaaaagtgctcggaaaagtcggaaccactcatcgcaagcttgaacgcggcggagctcacaagacatggacaattttcacagatcccgccaagccaacgctagttctcggaatcgacgtttctcatccatcgactcgtgatcgtgagactggtaatgtacttcagaaaatgtctgcagcgaccgtcgtcggaaatattgatctagatgtcaccgaattccgagcatcttcaagaattcaggatacaggtgtcgagtgtctgatcgatttctcgaaagagatcgatgaacgaatcggagagttcatagatcacactgggaaacgtccagcacatattgttgtctatcgtgacgggctatcagagggagatttccaaaagtacctgttcgaggagcgcgtttgcattgaggaacgatgccttaaaatcgacacctcattccaaccatcaataacgtatatcgtagttaccaagcgacatcatactcaattcttcctagaagatccgagtcaaggatacgaatcacagggttacaatgtcctaccgggaactttaatcgaagacgctgttaccaccaacaagtactacgatttcttcctctccacacagatcggcaatgaaggatgtttccgtccaactcattactatgtgcttcacgatacgtggaccgggaagcccgactcgttctggccgactgtcacgcatgcgttgacctataatttctgtagatcaacgaccactgtcgcgttgccagcgccggtgttgtatgctcatttggcggcgaaacgtgccaaggagacgctggatggaatcaatacgtacaagtcagtaaataatatctactgcgacctcgaatcattcggagacctctgcgaagtcaacaaggacatgaatgtcaacgaaaagctcgaaggaatgacatttgtctaatatgtttcttaatgatttcaatcaactgttccatttttcacgttctttattatatttaccctaacaaccaacctttaatcaactaaaatgtacaagtatttcgacatcattttcccaattttctcaactattcctttacttttacactttaaattgccccgaaattgcttatttcttgttccatatttcaaatttcaaattctcggattctcacttgcccctaatcccacaaaagttttaaaatttgccacaacaataataataaacccccaagcagtt
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]