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Previous release (v1)
2024-04-20 00:50:46, GGRNA : RefSeq release 222 (Jan, 2024)
Summary:
Results:
Matches are highlighted with green background.
Overlapping matches are dark colored.
LOCUS NM_076767 516 bp mRNA linear INV 22-NOV-2023 DEFINITION Caenorhabditis elegans Systemic RNA interference defective protein 5 (sid-5), mRNA. ACCESSION NM_076767 VERSION NM_076767.6 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003284). On Apr...
LOCUS NM_001392154 996 bp mRNA linear INV 22-NOV-2023 DEFINITION Caenorhabditis elegans Enhanced RNAI (RNA interference) (eri-6), mRNA. ACCESSION NM_001392154 VERSION NM_001392154.1 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003279). FEATURES...
LOCUS NM_067422 1028 bp mRNA linear INV 22-NOV-2023 DEFINITION Caenorhabditis elegans Systemic RNA interference defective protein 2 (sid-2), mRNA. ACCESSION NM_067422 VERSION NM_067422.7 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003281). On Sep...
LOCUS NM_001379821 2123 bp mRNA linear INV 22-NOV-2023 DEFINITION Caenorhabditis elegans Enhanced RNAI (RNA interference) (eri-6), mRNA. ACCESSION NM_001379821 VERSION NM_001379821.1 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003279). FEATURES...
LOCUS NM_001262695 1364 bp mRNA linear INV 22-NOV-2023 DEFINITION Caenorhabditis elegans Enhanced RNAI (RNA interference) (eri-6), mRNA. ACCESSION NM_001262695 VERSION NM_001262695.4 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003279). On Feb...
LOCUS NM_001262696 1270 bp mRNA linear INV 22-NOV-2023 DEFINITION Caenorhabditis elegans Enhanced RNAI (RNA interference) (eri-6), mRNA. ACCESSION NM_001262696 VERSION NM_001262696.4 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003279). On Feb...
LOCUS NM_001262693 1041 bp mRNA linear INV 22-NOV-2023 DEFINITION Caenorhabditis elegans Enhanced RNAI (RNA interference) (eri-6), partial mRNA. ACCESSION NM_001262693 VERSION NM_001262693.4 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003279). On...
LOCUS NM_001026107 1273 bp mRNA linear INV 22-NOV-2023 DEFINITION Caenorhabditis elegans RNA interference defective protein 11 (rde-11), mRNA. ACCESSION NM_001026107 VERSION NM_001026107.7 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003282). On Sep...
LOCUS NM_001392152 1290 bp mRNA linear INV 22-NOV-2023 DEFINITION Caenorhabditis elegans Enhanced RNAI (RNA interference) (eri-6), partial mRNA. ACCESSION NM_001392152 VERSION NM_001392152.1 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003279)....
LOCUS NM_058777 2097 bp mRNA linear INV 22-NOV-2023 DEFINITION Caenorhabditis elegans RNA interference defective protein 10 (rde-10), mRNA. ACCESSION NM_058777 VERSION NM_058777.7 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003279). On Sep 4, 2019...
LOCUS NM_071971 2653 bp mRNA linear INV 22-NOV-2023 DEFINITION Caenorhabditis elegans Systemic RNA interference defective protein 1 (sid-1), mRNA. ACCESSION NM_071971 VERSION NM_071971.10 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003283). On Feb...
LOCUS NM_058973 2189 bp mRNA linear INV 22-NOV-2023 DEFINITION Caenorhabditis elegans Enhanced RNAI (RNA interference) (eri-7), partial mRNA. ACCESSION NM_058973 VERSION NM_058973.8 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003279). On Feb...
LOCUS NM_001383215 2197 bp mRNA linear INV 22-NOV-2023 DEFINITION Caenorhabditis elegans Enhanced RNAI (RNA interference) (eri-12), mRNA. ACCESSION NM_001383215 VERSION NM_001383215.2 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003282). On Feb...
misc_feature 164..460 /gene="F55C9.3" /locus_tag="CELE_F55C9.3" /note="PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a...; Region: PAZ; cl00301" /db_xref="CDD:444818" ORIGIN // REFERENCE 1 (bases 1 to 619) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL...
misc_feature 822..>1034 /gene="F19G12.3" /locus_tag="CELE_F19G12.3" /note="PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a...; Region: PAZ; cl00301" /db_xref="CDD:444818" misc_feature order(930..932,942..944,996..998,1014..1016,1020..1022) /gene="F19G12.3" /locus_tag="CELE_F19G12.3" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239207" ORIGIN //...
misc_feature 1115..2041 /gene="nrde-2" /locus_tag="CELE_T01E8.5" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:400637" ORIGIN // REFERENCE 1 (bases 1 to 4054) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282 (5396), 2012-2018 (1998) PUBMED 9851916 REMARK Erratum:[Science 1999 Jan 1;283(5398):35] REFERENCE 2 (bases 1 to 4054) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (22-NOV-2023)...
misc_feature 982..1314 /gene="wago-1" /locus_tag="CELE_R06C7.1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1123..1125,1168..1170,1198..1200,1210..1212, 1264..1266,1285..1287,1291..1293) /gene="wago-1" /locus_tag="CELE_R06C7.1" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_...
misc_feature 1172..1516 /gene="nrde-3" /locus_tag="CELE_R04A9.2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1310..1312,1355..1357,1397..1399,1409..1411, 1463..1465,1484..1486,1490..1492) /gene="nrde-3" /locus_tag="CELE_R04A9.2" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db...
misc_feature 887..1240 /gene="ppw-1" /locus_tag="CELE_C18E3.7" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1043..1045,1085..1087,1121..1123,1133..1135, 1187..1189,1208..1210,1214..1216) /gene="ppw-1" /locus_tag="CELE_C18E3.7" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_...
misc_feature 889..1221 /gene="wago-5" /locus_tag="CELE_ZK1248.7" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1030..1032,1075..1077,1105..1107,1117..1119, 1171..1173,1192..1194,1198..1200) /gene="wago-5" /locus_tag="CELE_ZK1248.7" /note="nucleic acid-binding interface [nucleotide binding]; other site" /...
misc_feature 814..1167 /gene="sago-2" /locus_tag="CELE_F56A6.1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(970..972,1012..1014,1048..1050,1060..1062, 1114..1116,1135..1137,1141..1143) /gene="sago-2" /locus_tag="CELE_F56A6.1" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_...
misc_feature 1171..1446 /gene="hrde-1" /locus_tag="CELE_C16C10.3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1243..1245,1288..1290,1327..1329,1339..1341, 1393..1395,1414..1416,1420..1422) /gene="hrde-1" /locus_tag="CELE_C16C10.3" /note="nucleic acid-binding interface [nucleotide binding]; other site" /...
misc_feature 861..1214 /gene="sago-2" /locus_tag="CELE_F56A6.1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1017..1019,1059..1061,1095..1097,1107..1109, 1161..1163,1182..1184,1188..1190) /gene="sago-2" /locus_tag="CELE_F56A6.1" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_...
argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 972..1304 /gene="wago-4" /locus_tag="CELE_F58G1.1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1113..1115,1158..1160,1188..1190,1200..1202, 1254..1256,1275..1277,1281..1283) /gene="wago-4" /locus_tag="CELE_F58G1.1" /note="...
misc_feature 829..1182 /gene="ppw-1" /locus_tag="CELE_C18E3.7" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(985..987,1027..1029,1063..1065,1075..1077, 1129..1131,1150..1152,1156..1158) /gene="ppw-1" /locus_tag="CELE_C18E3.7" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref...
misc_feature 592..1002 /gene="csr-1" /locus_tag="CELE_F20D12.1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(802..804,847..849,865..867,898..900,949..951, 970..972,976..978) /gene="csr-1" /locus_tag="CELE_F20D12.1" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD...
misc_feature 866..1285 /gene="rde-1" /locus_tag="CELE_K08H10.7" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1073..1075,1118..1120,1169..1171,1181..1183, 1232..1234,1253..1255,1259..1261) /gene="rde-1" /locus_tag="CELE_K08H10.7" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_...
linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1136..1468 /gene="alg-4" /locus_tag="CELE_ZK757.3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1271..1273,1313..1315,1355..1357,1367..1369, 1418..1420,1439..1441,1445..1447) /gene="alg-4" /locus_tag="CELE_ZK757.3" /note="...
linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1164..1496 /gene="alg-4" /locus_tag="CELE_ZK757.3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1299..1301,1341..1343,1383..1385,1395..1397, 1446..1448,1467..1469,1473..1475) /gene="alg-4" /locus_tag="CELE_ZK757.3" /note="...
misc_feature 1156..1566 /gene="csr-1" /locus_tag="CELE_F20D12.1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1366..1368,1411..1413,1429..1431,1462..1464, 1513..1515,1534..1536,1540..1542) /gene="csr-1" /locus_tag="CELE_F20D12.1" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db...
misc_feature 1097..1375 /gene="wago-10" /locus_tag="CELE_T22H9.3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1178..1180,1223..1225,1256..1258,1268..1270, 1322..1324,1343..1345,1349..1351) /gene="wago-10" /locus_tag="CELE_T22H9.3" /note="nucleic acid-binding interface [nucleotide binding]; other site" /...
linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 820..1185 /gene="alg-2" /locus_tag="CELE_T07D3.7" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(979..981,1024..1026,1066..1068,1078..1080, 1132..1134,1153..1155,1159..1161) /gene="alg-2" /locus_tag="CELE_T07D3.7" /note="nucleic...
linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 765..1130 /gene="alg-2" /locus_tag="CELE_T07D3.7" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(924..926,969..971,1011..1013,1023..1025,1077..1079, 1098..1100,1104..1106) /gene="alg-2" /locus_tag="CELE_T07D3.7" /note="nucleic...
linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1108..1440 /gene="alg-3" /locus_tag="CELE_T22B3.2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1243..1245,1285..1287,1327..1329,1339..1341, 1390..1392,1411..1413,1417..1419) /gene="alg-3" /locus_tag="CELE_T22B3.2" /note="...
linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1175..1507 /gene="alg-3" /locus_tag="CELE_T22B3.2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1310..1312,1352..1354,1394..1396,1406..1408, 1457..1459,1478..1480,1484..1486) /gene="alg-3" /locus_tag="CELE_T22B3.2" /note="...
linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1134..1499 /gene="alg-1" /locus_tag="CELE_F48F7.1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1293..1295,1338..1340,1380..1382,1392..1394, 1446..1448,1467..1469,1473..1475) /gene="alg-1" /locus_tag="CELE_F48F7.1" /note="...
linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1168..1533 /gene="alg-1" /locus_tag="CELE_F48F7.1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1327..1329,1372..1374,1414..1416,1426..1428, 1480..1482,1501..1503,1507..1509) /gene="alg-1" /locus_tag="CELE_F48F7.1" /note="...
gene="dcr-1" /locus_tag="CELE_K12H4.8" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:427264" misc_feature 2513..2875 /gene="dcr-1" /locus_tag="CELE_K12H4.8" /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named...; Region: PAZ_dicer_like; cd02843" /db_xref="CDD:239209" misc_feature order...
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Redirect URI : http://ggrna.dbcls.jp/ce/%22RNA+interference%22
lang : en |
div : |
spe : ce |
query_string : "RNA interference" |
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download :
0.000 | 0.000 | search_start;
0.076 | 0.076 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:RNA+interference)%7C(nt:RNA+interference)%7C(aa:RNA+interference))?source=Caenorhabditis elegans?to=0&format=json
0.156 | 0.080 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:RNA+interference)%7C(nt:RNA+interference)%7C(aa:RNA+interference))?source=Caenorhabditis elegans?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.160 | 0.004 | cgi_end;
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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