LOCUS       NM_180620               1401 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana homeobox protein knotted-1-like 6 (KNAT6),
            mRNA.
ACCESSION   NM_180620
VERSION     NM_180620.3
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1401)
  AUTHORS   Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
            White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
            Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
            Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
            Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
            Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
            Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
            Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
            Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
            Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
            Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
            Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
            Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
            Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
            Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
            Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
            Fraser,C.M., Venter,J.C. and Davis,R.W.
  TITLE     Sequence and analysis of chromosome 1 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 816-820 (2000)
   PUBMED   11130712
REFERENCE   2  (bases 1 to 1401)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1401)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1401)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   5  (bases 1 to 1401)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003070).
            
            On Sep 12, 2016 this sequence version replaced NM_180620.2.
FEATURES             Location/Qualifiers
     source          1..1401
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="1"
                     /ecotype="Columbia"
     gene            1..1401
                     /gene="KNAT6"
                     /locus_tag="AT1G23380"
                     /gene_synonym="F26F24.32; F26F24_32; KNAT6L; KNAT6S;
                     KNOTTED1-like homeobox gene 6"
                     /note="homeodomain transcription factor KNAT6, belonging
                     to class I of KN transcription factor family (which also
                     includes KNAT1 and KNAT2). Expression is increased in as
                     and bop1 leaf mutants."
                     /db_xref="Araport:AT1G23380"
                     /db_xref="GeneID:838946"
                     /db_xref="TAIR:AT1G23380"
     CDS             160..1143
                     /gene="KNAT6"
                     /locus_tag="AT1G23380"
                     /gene_synonym="F26F24.32; F26F24_32; KNAT6L; KNAT6S;
                     KNOTTED1-like homeobox gene 6"
                     /inference="Similar to RNA sequence,
                     EST:INSD:DR355554.1,INSD:DR275259.1,INSD:DR750037.1,
                     INSD:AU227229.1,INSD:DR750038.1,INSD:AU236333.1,
                     INSD:DR380126.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:BT004370.1,INSD:BX842541.1,INSD:AB072361.1,
                     INSD:BT002930.1"
                     /note="KNOTTED1-like homeobox gene 6 (KNAT6); FUNCTIONS
                     IN: DNA binding, transcription activator activity,
                     sequence-specific DNA binding transcription factor
                     activity; INVOLVED IN: meristem maintenance; LOCATED IN:
                     nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED
                     DURING: 4 anthesis, F mature embryo stage, petal
                     differentiation and expansion stage, E expanded cotyledon
                     stage, D bilateral stage; CONTAINS InterPro DOMAIN/s:
                     KNOX2 (InterPro:IPR005541), ELK (InterPro:IPR005539),
                     Homeobox (InterPro:IPR001356), KNOX1 (InterPro:IPR005540),
                     Homeobox, conserved site (InterPro:IPR017970),
                     Homeodomain-like (InterPro:IPR009057), Homeodomain-related
                     (InterPro:IPR012287); BEST Arabidopsis thaliana protein
                     match is: KNOTTED-like from Arabidopsis thaliana 2
                     (TAIR:AT1G70510.1); Has 35333 Blast hits to 34131 proteins
                     in 2444 species: Archae - 798; Bacteria - 22429; Metazoa -
                     974; Fungi - 991; Plants - 531; Viruses - 0; Other
                     Eukaryotes - 9610 (source: NCBI BLink)."
                     /codon_start=1
                     /product="homeobox protein knotted-1-like 6"
                     /protein_id="NP_850951.2"
                     /db_xref="Araport:AT1G23380"
                     /db_xref="GeneID:838946"
                     /db_xref="TAIR:AT1G23380"
                     /translation="

MDGMYNFHSAGDYSDKSVLMMSPESLMFPSDYQALLCSSAGENRVSDVFGSDELLSVAVSALSSEAASIAPEIRRNDDNVSLTVIKAKIACHPSYPRLLQAYIDCQKVGAPPEIACLLEEIQRESDVYKQEVVPSSCFGADPELDEFMETYCDILVKYKSDLARPFDEATCFLNKIEMQLRNLCTGVESARGVSEDGVISSDEELSGGDHEVAEDGRQRCEDRDLKDRLLRKFGSRISTLKLEFSKKKKKGKLPREARQALLDWWNLHYKWPYPTEGDKIALADATGLDQKQINNWFINQRKRHWKPSENMPFAMMDDSSGSFFTEE"

     misc_feature    409..528
                     /gene="KNAT6"
                     /locus_tag="AT1G23380"
                     /gene_synonym="F26F24.32; F26F24_32; KNAT6L; KNAT6S;
                     KNOTTED1-like homeobox gene 6"
                     /note="KNOX1 domain; Region: KNOX1; pfam03790"
                     /db_xref="CDD:461051"
     misc_feature    568..711
                     /gene="KNAT6"
                     /locus_tag="AT1G23380"
                     /gene_synonym="F26F24.32; F26F24_32; KNAT6L; KNAT6S;
                     KNOTTED1-like homeobox gene 6"
                     /note="KNOX2 domain; Region: KNOX2; pfam03791"
                     /db_xref="CDD:427506"
     misc_feature    829..894
                     /gene="KNAT6"
                     /locus_tag="AT1G23380"
                     /gene_synonym="F26F24.32; F26F24_32; KNAT6L; KNAT6S;
                     KNOTTED1-like homeobox gene 6"
                     /note="ELK domain; Region: ELK; pfam03789"
                     /db_xref="CDD:427504"
     misc_feature    952..1068
                     /gene="KNAT6"
                     /locus_tag="AT1G23380"
                     /gene_synonym="F26F24.32; F26F24_32; KNAT6L; KNAT6S;
                     KNOTTED1-like homeobox gene 6"
                     /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920"
                     /db_xref="CDD:428673"
ORIGIN      

ctctacacactcccatagaaataaatattttcaagaaccaaaaagtttgttataagcggtttcatattattcttcttcatcgattcttgattttgcaagaagacaattcaagaaagcgatttagaagacggaggagttcttaccggagatcttatacttatggatggaatgtacaatttccattcggccggtgattattcagataagtcggttctgatgatgtcaccggagagtctcatgtttccttccgattaccaagctttgctatgttcctccgccggtgaaaatcgtgtctctgatgttttcggatccgacgagctactctcagtagccgtctccgctttgtcgtcggaggcggcttcgatcgctccggagatccgaagaaatgatgataacgtttctctaactgtcatcaaagctaaaatcgcttgtcatccttcgtatcctcgcttacttcaagcttacatcgattgccaaaaggtcggagcaccaccggagatagcgtgtttactagaggagattcaacgggagagtgatgtttataagcaagaggttgttccttcttcttgctttggagctgatcctgagcttgatgaatttatggaaacgtactgcgatatattagtgaaatacaaatcggatctagcaagaccgtttgacgaggcaacgtgtttcttgaacaagattgagatgcagctacggaacctatgtactggtgtcgagtctgccaggggagtttctgaggatggtgtaatatcatctgacgaggaactgagtggaggtgatcatgaggtagcagaggatgggagacaaagatgtgaagaccgggacctcaaagataggttgctacgcaaatttggaagccgtattagtactttaaagcttgagttctcaaagaagaagaagaaaggaaagttaccaagagaagcaagacaagctcttcttgattggtggaatctccattataagtggccttaccctactgaaggagataagatagcattagctgatgcaacggggttagaccaaaaacaaatcaacaattggtttataaaccaaaggaaacgtcattggaagccatcagagaatatgcctttcgctatgatggatgattctagtggatcattctttaccgaggaatgaatttatttatggtacttatttaacgttgattaaaagatggatgtataattctgccttgctttgccgacaaaggaaaaaaagaaagaaagagtgaagcatggacgacacatgaaatggatcttacactcactcacatgtagtagaaggaacaagtcaaaatgctttgtaactattattatcggtgaataaaaataacctcttttgtcttctccggacctctcgtgatatagcttttaccctcttattggcaaaacgttg

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