LOCUS       NM_110988               1397 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana homeobox protein 20 (HB20), mRNA.
ACCESSION   NM_110988
VERSION     NM_110988.3
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1397)
  AUTHORS   Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
            Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
            Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
            Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
            Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
            Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
            Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
            Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
            Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
            Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
            Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
            Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
            Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
            Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
            Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
            Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
            Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
            Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
            Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
            Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
            Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
            Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
            Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
            Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
            Yamada,M., Yasuda,M. and Tabata,S.
  CONSRTM   European Union Chromosome 3 Arabidopsis Sequencing Consortium;
            Institute for Genomic Research; Kazusa DNA Research Institute
  TITLE     Sequence and analysis of chromosome 3 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 820-822 (2000)
   PUBMED   11130713
REFERENCE   2  (bases 1 to 1397)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1397)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1397)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003074).
            
            On Sep 12, 2016 this sequence version replaced NM_110988.2.
FEATURES             Location/Qualifiers
     source          1..1397
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="3"
                     /ecotype="Columbia"
     gene            1..1397
                     /gene="HB20"
                     /locus_tag="AT3G01220"
                     /gene_synonym="ATHB20; homeobox protein 20; T4P13.9;
                     T4P13_9"
                     /note="Encodes a homeodomain leucine zipper class I
                     (HD-Zip I) protein. Expressed during seed germination in
                     the micropylar endosperm and in the root cap, and
                     increases ABA sensitivity and seed dormancy when mutated."
                     /db_xref="Araport:AT3G01220"
                     /db_xref="GeneID:821232"
                     /db_xref="TAIR:AT3G01220"
     CDS             293..1153
                     /gene="HB20"
                     /locus_tag="AT3G01220"
                     /gene_synonym="ATHB20; homeobox protein 20; T4P13.9;
                     T4P13_9"
                     /inference="Similar to RNA sequence,
                     EST:INSD:EL232356.1,INSD:DR750730.1,INSD:DR318533.1,
                     INSD:AU228448.1,INSD:DR750524.1,INSD:DR318534.1,
                     INSD:BP611854.1,INSD:DR318536.1,INSD:EH985186.1,
                     INSD:DR318535.1,INSD:DR356558.1,INSD:EH909251.1,
                     INSD:DR370593.1,INSD:DR750729.1,INSD:BP601346.1"
                     /inference="Similar to RNA sequence,
                     mRNA:INSD:BT029221.1,INSD:AK228890.1,INSD:AY087631.1"
                     /note="homeobox protein 20 (HB20); FUNCTIONS IN: DNA
                     binding, sequence-specific DNA binding transcription
                     factor activity; INVOLVED IN: response to auxin stimulus,
                     regulation of transcription, DNA-dependent; LOCATED IN:
                     nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED
                     DURING: E expanded cotyledon stage; CONTAINS InterPro
                     DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970),
                     Homeobox (InterPro:IPR001356), Homeodomain-like
                     (InterPro:IPR009057), Helix-turn-helix motif, lambda-like
                     repressor (InterPro:IPR000047), Leucine zipper,
                     homeobox-associated (InterPro:IPR003106),
                     Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis
                     thaliana protein match is: homeobox 3 (TAIR:AT5G15150.1);
                     Has 9615 Blast hits to 9578 proteins in 515 species:
                     Archae - 0; Bacteria - 1; Metazoa - 7277; Fungi - 141;
                     Plants - 2025; Viruses - 4; Other Eukaryotes - 167
                     (source: NCBI BLink)."
                     /codon_start=1
                     /product="homeobox protein 20"
                     /protein_id="NP_186771.1"
                     /db_xref="GeneID:821232"
                     /db_xref="TAIR:AT3G01220"
                     /db_xref="Araport:AT3G01220"
                     /translation="

MYVFDPTTEAGLRLEMAFPQHGFMFQQLHEDNSQDQLPSCPPHLFNGGGNYMMNRSMSLMNVQEDHNQTLDEENLSDDGAHTMLGEKKKRLQLEQVKALEKSFELGNKLEPERKIQLAKALGMQPRQIAIWFQNRRARWKTRQLERDYDSLKKQFESLKSDNASLLAYNKKLLAEVMALKNKECNEGNIVKREAEASWSNNGSTENSSDINLEMPRETITTHVNTIKDLFPSSIRSSAHDDDHHQNHEIVQEESLCNMFNGIDETTPAGYWAWSDPNHNHHHHQFN"

     misc_feature    551..712
                     /gene="HB20"
                     /locus_tag="AT3G01220"
                     /gene_synonym="ATHB20; homeobox protein 20; T4P13.9;
                     T4P13_9"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
     misc_feature    716..841
                     /gene="HB20"
                     /locus_tag="AT3G01220"
                     /gene_synonym="ATHB20; homeobox protein 20; T4P13.9;
                     T4P13_9"
                     /note="Homeobox associated leucine zipper; Region: HALZ;
                     pfam02183"
                     /db_xref="CDD:460477"
ORIGIN      

cagaaactataaaataactttattacatgaactggagaatatatatgaaatataataataagcctaaagcttttaaaatattaaggatgggtcctagaaacctccctagcttgatcctttcctcattctttctctctctttctcttatatgagaggttgatgagatccacaagaaacacctaactcatttgatagtgatttccaaatctgcaaacaacaaagtatatttgatcatcactatactgatttcacaatccattaatcactgataggtttttggtggaatacatacatgtatgtgtttgatccaacaacagaagctggattgagattagagatggcgtttcctcaacatggttttatgttccaacaacttcatgaagacaacagtcaagatcagctcccttcttgtcctcctcatctcttcaatggaggaggaaactacatgatgaacagatctatgtctttaatgaacgtgcaagaagatcataatcaaaccttggatgaggagaatctatcagacgatggggcacatactatgctgggagagaagaagaagaggctgcaattagagcaagttaaggcattagagaagagctttgagcttggtaacaagctggagccagagaggaagatacaactagctaaagcattagggatgcaaccaagacagatcgcgatttggtttcaaaacaggagagctaggtggaagactagacagctcgagagagattatgattcactcaagaaacagtttgagtctcttaaatccgacaatgcttctctacttgcctataacaagaaactccttgctgaggtaatggctttaaagaacaaagaatgtaatgaaggaaacatagtaaagagagaagcagaagcttcatggagcaacaacggaagcacagagaatagttcagacatcaatctggagatgcctagagagaccattacaacacatgtgaacacgatcaaagacctattcccttcatcgattcgatcatctgcacatgatgatgatcatcatcagaatcatgaaatagttcaagaagaaagcctttgtaacatgtttaatggcattgatgaaacgacgccggctggttactgggcatggtctgacccaaaccacaaccaccaccaccaccagttcaactgattcatgattctaaagctcaaaaaaaagtcatcagcacgcatcaagacaaatgatcataatcatcatcatcatatcatcaggagaagatcaagacacaattcttctctttggaattatgttattgctactcatttcaatttaaattaatggagcattttgttttctttgggtttgtagagcattggtgtatagtgcgaaaatttgttgttgctttaatttaataaaaatcataaagttctttgca

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