LOCUS       NM_001203340            2250 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana nuclear matrix protein-like protein (THO1),
            mRNA.
ACCESSION   NM_001203340
VERSION     NM_001203340.2
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 2250)
  AUTHORS   Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
            Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
            Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
            Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
            Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
            Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
            Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
            Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
            Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
            Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
            Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
            See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
            Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
            Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
            Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
            Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
            Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
            Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
            Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
            Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
            Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
            Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
            Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
  CONSRTM   Kazusa DNA Research Institute; Cold Spring Harbor and Washington
            University in St Louis Sequencing Consortium; European Union
            Arabidopsis Genome Sequencing Consortium
  TITLE     Sequence and analysis of chromosome 5 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 823-826 (2000)
   PUBMED   11130714
REFERENCE   2  (bases 1 to 2250)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2250)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 2250)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003076).
            
            On Sep 12, 2016 this sequence version replaced NM_001203340.1.
FEATURES             Location/Qualifiers
     source          1..2250
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="5"
                     /ecotype="Columbia"
     gene            1..2250
                     /gene="THO1"
                     /locus_tag="AT5G09860"
                     /gene_synonym="AtHPR1; AtTHO1; HPR1; MYH9.7; MYH9_7"
                     /note="Encodes a component of the putative Arabidopsis
                     THO/TREX complex: THO1 or HPR1 (At5g09860), THO2
                     (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920,
                     At1g45233), THO6 (At2g19430), and THO7 (At5g16790,
                     At3g02950). THO/TREX complexes in animals have been
                     implicated in the transport of mRNA precursors. Mutants of
                     THO3/TEX1, THO1, THO6 accumulate reduced amount of small
                     interfering (si)RNA, suggesting a role of the putative
                     Arabidopsis THO/TREX in siRNA biosynthesis."
                     /db_xref="Araport:AT5G09860"
                     /db_xref="GeneID:830846"
                     /db_xref="TAIR:AT5G09860"
     CDS             254..2050
                     /gene="THO1"
                     /locus_tag="AT5G09860"
                     /gene_synonym="AtHPR1; AtTHO1; HPR1; MYH9.7; MYH9_7"
                     /note="THO1; FUNCTIONS IN: molecular_function unknown;
                     INVOLVED IN: production of ta-siRNAs involved in RNA
                     interference, gene silencing by RNA; LOCATED IN:
                     cellular_component unknown; EXPRESSED IN: 22 plant
                     structures; EXPRESSED DURING: 13 growth stages; CONTAINS
                     InterPro DOMAIN/s: THO complex, subunit THOC1
                     (InterPro:IPR021861)."
                     /codon_start=1
                     /product="nuclear matrix protein-like protein"
                     /protein_id="NP_001190269.1"
                     /db_xref="GeneID:830846"
                     /db_xref="TAIR:AT5G09860"
                     /db_xref="Araport:AT5G09860"
                     /translation="

MDAFRDAILQRAPIETFALKTVQHFIQPQKQTKLAQDENQMLENMLRTLLQELVAAAAQSGEQIMQYGQLIDDDDDDDDIHGQIPHLLDVVLYLCEKEHVEGGMIFQLLEDLTEMSTMKNCKDVFGYIESKQDILGKQELFARGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDPPKGISVDFNFYKTFWSLQEYFCNPASLTSASTKWQKFSSSLAVVLNTFDAQPLSEEEGEANSLEEEAATFNIKYLTSSKLMGLELKDSSFRRHILLQCLIMFDYLRAPGKNDKDLPSETMEELKSCEDRVKKLLEITPPKGKEFLRAVEHILEREKNWVWWKRDGCPPFEKQPIDKKSPNAGQKKRRQRWRLGNKELSQLWRWADQNPNALTDSQRVRTPDIADYWKPLAEDMDPSAGIEDEYHHKNNRVYCWKGLRFTARQDLEGFSRFTEMGIEGVVPVELLPPEVRSKYQAKPNEKAKRAKKEETKGGSHETEGNQIGVSNSEAEAEGGRGDAETMESDAIADTPTPEEQQRLGGSDTENGQEAGQIEDGETEEAGLMDTDLDHPPMPVS"

     misc_feature    512..1789
                     /gene="THO1"
                     /locus_tag="AT5G09860"
                     /gene_synonym="AtHPR1; AtTHO1; HPR1; MYH9.7; MYH9_7"
                     /note="THO complex subunit 1 transcription elongation
                     factor; Region: efThoc1; pfam11957"
                     /db_xref="CDD:432220"
ORIGIN      

aagcccggatatttgcggataatttgattgttgggaggatatcttccggatccggatccaccctaaattaaaattgttcttcctccactcttcttcaagtttggcctccgtttccagatttttattcaattcttcttaatcaacttttaaaatccggcgactcatagtccgtgaattttgaccggcatatccggttttggtgtcgtcggtaaattcctcttcattgcagtggaagctggttcattgagaaataatggatgcatttagagatgctatattgcagcgagctccaattgaaacctttgcactcaagactgttcaacactttatacaacctcagaaacaaacaaagttggctcaagatgaaaaccaaatgcttgaaaacatgctccggacattgctgcaggagctagtggctgctgctgcgcaatcaggggagcaaattatgcagtatggtcagttgattgacgatgatgatgatgatgatgatatacatggacagattcctcatcttctagatgttgtgctttatctttgtgagaaagagcatgtagaaggtggcatgatattccagctgctggaggatttgaccgaaatgtctactatgaaaaactgtaaagatgttttcggttatattgaaagcaaacaagatatattgggcaagcaagagctttttgcacgcggaaaacttgtcatgttgaggacttgcaaccaacttctccgccgactctcaaaggccaatgatgttgtattctgtggaaggattcttatgtttttggctcacttttttccgttatctgagcgctcagccgtcaatataaaaggtgtttttaatacatctaatgaaaccaaatatgaaaaagatcctccaaaaggcatttctgtagatttcaacttctacaagacattttggagtttacaggagtatttctgtaatcccgcttctcttacttccgcatctaccaagtggcagaaattttcatccagtttggcggttgttttaaacacctttgatgctcaaccactaagcgaagaagagggagaggctaatagtttggaggaagaggcagcaacttttaatataaagtacctaacaagtagtaaattgatgggtttagagttaaaggattcgagtttccgacgacatattcttctccagtgcctcattatgtttgattatctaagggcaccagggaagaacgacaaagatctgccatctgaaaccatggaagaacttaagtcatgtgaggatcgtgtaaagaaattgcttgagatcactccgcctaaagggaaagaattcctccgtgcagttgagcatatactggagcgcgaaaagaattgggtctggtggaaacgtgatggatgtccaccatttgaaaagcaaccgatagataagaaatcacctaatgcagggcaaaagaaacggagacaaagatggagattgggaaataaagaactctcccaactttggagatgggcagatcaaaatccgaatgctttgactgattctcaacgcgtgcgaacccctgatattgcagactactggaaaccattagcagaagatatggatccatcagctggcatagaagatgagtaccatcataaaaacaacagagtttactgctggaaaggtcttcggtttacagctcggcaagaccttgaaggattttctaggtttactgaaatgggaatcgaaggagttgtcccagttgaactattgccgcctgaggtccggtccaaataccaagctaaaccaaacgaaaaagccaaacgagcgaagaaagaagaaaccaaaggtggatctcatgaaacagagggaaaccagattggtgtttctaatagtgaagctgaagctgaaggaggaaggggtgatgcagagacgatggagagtgatgctattgcagacactcctacgcctgaggaacagcaaagactcggtggttctgatacagaaaacggtcaagaggccggtcaaatcgaagacggagagacagaagaagctggtctgatggacactgatcttgatcatcctcctatgcccgtctcatgaatacgctttcagtttgtcgaccctttcttcaatggggaatcctttggatatgaagttcaaaagtattgatgtttaacaaattatgttaaaaggtattttctaaatatgtttgtatgagtgcaaatctgctagcttattacctgtctttccatttctatatactcaacaaaatcatcatacaattaagttcttttgcgtaa

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