LOCUS       NM_001202971            1227 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana silencing defective 5 (SDE5), mRNA.
ACCESSION   NM_001202971
VERSION     NM_001202971.2
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1227)
  AUTHORS   Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
            Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
            Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
            Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
            Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
            Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
            Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
            Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
            Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
            Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
            Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
            Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
            Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
            Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
            Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
            Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
            Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
            Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
            Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
            Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
            Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
            Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
            Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
            Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
            Yamada,M., Yasuda,M. and Tabata,S.
  CONSRTM   European Union Chromosome 3 Arabidopsis Sequencing Consortium;
            Institute for Genomic Research; Kazusa DNA Research Institute
  TITLE     Sequence and analysis of chromosome 3 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 820-822 (2000)
   PUBMED   11130713
REFERENCE   2  (bases 1 to 1227)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1227)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1227)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003074).
            
            On Sep 12, 2016 this sequence version replaced NM_001202971.1.
FEATURES             Location/Qualifiers
     source          1..1227
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="3"
                     /ecotype="Columbia"
     gene            1..1227
                     /gene="SDE5"
                     /locus_tag="AT3G15390"
                     /gene_synonym="silencing defective 5"
                     /note="Encodes a novel protein that is similar to PRL1
                     interacting factor and is involved in virus induced
                     silencing."
                     /db_xref="Araport:AT3G15390"
                     /db_xref="GeneID:820778"
                     /db_xref="TAIR:AT3G15390"
     CDS             161..1060
                     /gene="SDE5"
                     /locus_tag="AT3G15390"
                     /gene_synonym="silencing defective 5"
                     /note="silencing defective 5 (SDE5); FUNCTIONS IN:
                     molecular_function unknown; INVOLVED IN: production of
                     ta-siRNAs involved in RNA interference; LOCATED IN:
                     cellular_component unknown; EXPRESSED IN: 21 plant
                     structures; EXPRESSED DURING: 12 growth stages; CONTAINS
                     InterPro DOMAIN/s: Domain of unknown function DUF1771
                     (InterPro:IPR013899); BEST Arabidopsis thaliana protein
                     match is: smr (Small MutS Related) domain-containing
                     protein (TAIR:AT5G58720.1)."
                     /codon_start=1
                     /product="silencing defective 5"
                     /protein_id="NP_001189900.1"
                     /db_xref="GeneID:820778"
                     /db_xref="TAIR:AT3G15390"
                     /db_xref="Araport:AT3G15390"
                     /translation="

MALSTEKLLDFSDTKKYADVGISNEVMSKVDPQRQSTSCNQMELQKISQSVGARTFTGSQEGRNAKNGLEKEVLEALFSGAERYVDKPKVTRHFGERRPGVAGRPVFKPLEDPFQERVVAVKQSSNTSKEDDDENEFKAHRKAVREHLNQMKEYYGAAAEAFSKGETERAHRLVEKGHFFGQKAREADDKSVAKMIDVNQEDDSTYEEDEVVTVNMNEHEAKEALRLLKRQLIYFSGISSFKYLRVQLGEKKEDFKSKRKHIVKLLEGESIPWTEEDGGLVIMIRVDEIDPKKLSFAKK"

     misc_feature    578..757
                     /gene="SDE5"
                     /locus_tag="AT3G15390"
                     /gene_synonym="silencing defective 5"
                     /note="Domain of unknown function (DUF1771); Region:
                     DUF1771; pfam08590"
                     /db_xref="CDD:430094"
ORIGIN      

caataattacaattatacccttgagccactttgacaatccttttctctgtcttggtactactgctgactaaaatttgagataaagttgacttttcataccgactgtcgcctctaattttgatcacttgattgttagtggtatctctataactcttggcatatggctcttagtacggagaaactgcttgacttttctgataccaagaaatatgctgatgttggaatttccaatgaagttatgtcaaaagttgatcctcaaagacaatctacatcctgcaaccaaatggaactacaaaaaatttctcagagtgttggagcaagaacctttacaggttcacaggaagggcgtaatgctaagaatggtcttgaaaaggaagttttagaagctttgttctcaggtgcggaaagatatgtggacaaaccaaaagtaactcgacattttggagaaaggagacctggagttgctggtcgtcctgtttttaaacctctggaagacccttttcaagagagagtagttgctgtgaaacaatcgtccaatacatctaaagaagatgacgatgaaaatgaatttaaggcacatcgtaaagcagtacgcgagcatttgaatcagatgaaagaatattatggagctgctgcagaagcattctccaaaggagaaaccgagcgagcacacagactcgtggagaagggacacttttttggacaaaaagctcgagaagcagatgacaaatctgtagcaaagatgattgacgtcaatcaagaagatgattcaacttacgaggaagacgaggtagtgacagtaaatatgaatgaacacgaagcaaaagaagctcttcgtcttctcaagcgccaacttatttacttctctggcatttcatctttcaagtacctcagagtccaattgggtgagaagaaggaagatttcaagagcaaacgaaagcatatcgtaaagctgctggagggagaatccattccttggactgaagaagatggcggcctcgtgataatgattcgggttgatgagattgaccccaagaaattgagttttgccaagaaataagaaccattggtttattcttttgcttcattctattagaaattggttgcaacgtttaaagcattatgatttgttatgtaaccaaacaaagatgcattttgcggaaatatgatttttggtttcggaatcgaagaattatcaagccatctgacattacaatatgcttagaa

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