GGRNA ver.2 Help | Advanced search | Japanese    Previous release (v1)

2024-11-21 22:20:22, GGRNA : RefSeq release 226 (Sep, 2024)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

Arabidopsis thaliana PAZ domain-containing protein / piwi domain-containing protein (AT5G21030), partial mRNA. (2628 bp)
note="PAZ domain-containing protein / piwi domain-containing protein; FUNCTIONS IN: nucleic acid binding; EXPRESSED IN: egg cell; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1785 (InterPro:IPR014811), Stem cell self-renewal protein Piwi (InterPro:IPR003165), Argonaute/Dicer protein,...misc_feature 1..2550 /locus_tag="AT5G21030" /gene_synonym="T10F18.3" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" ORIGIN // REFERENCE 1 (bases 1 to 2628) AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E., Miyajima,N., Sasamoto,S., Kimura,T.,...
Synonym: T10F18.3
NM_122111.3 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana ARGONAUTE 3 (AGO3), mRNA. (3667 bp)
misc_feature 1077..1289 /gene="AGO3" /locus_tag="AT1G31290" /gene_synonym="ARGONAUTE 3; T19E23.8; T19E23_8" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 1476..1847 /gene="AGO3" /locus_tag="AT1G31290" /gene_synonym="ARGONAUTE 3; T19E23.8; T19E23_8" /note="PAZ domain; Region: PAZ; pfam02170" /db_xref="CDD:460472" misc_feature 1959..3284 /gene="AGO3" /locus_tag="AT1G31290" /gene_synonym="ARGONAUTE 3; T19E23.8; T19E23_8" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex...
Synonym: ARGONAUTE 3; T19E23.8; T19E23_8
NM_001332953.1 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana ARGONAUTE 3 (AGO3), mRNA. (3918 bp)
misc_feature 1290..1502 /gene="AGO3" /locus_tag="AT1G31290" /gene_synonym="ARGONAUTE 3; T19E23.8; T19E23_8" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 1689..2060 /gene="AGO3" /locus_tag="AT1G31290" /gene_synonym="ARGONAUTE 3; T19E23.8; T19E23_8" /note="PAZ domain; Region: PAZ; pfam02170" /db_xref="CDD:460472" misc_feature 2172..3497 /gene="AGO3" /locus_tag="AT1G31290" /gene_synonym="ARGONAUTE 3; T19E23.8; T19E23_8" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex...
Synonym: ARGONAUTE 3; T19E23.8; T19E23_8
NM_001332952.1 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana Argonaute family protein (AGO2), mRNA. (3602 bp)
Stem cell self-renewal protein Piwi (InterPro:IPR003165), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: ARGONAUTE 3 (TAIR:AT1G31290.1); Has 30240 Blast hits to 14140 proteins in...gene_synonym="argonaute 2; AtAGO2; T19E23.7; T19E23_7" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 1384..1737 /gene="AGO2" /locus_tag="AT1G31280" /gene_synonym="argonaute 2; AtAGO2; T19E23.7; T19E23_7" /note="PAZ domain; Region: PAZ; pfam02170" /db...
Synonym: argonaute 2; AtAGO2; T19E23.7; T19E23_7
NM_102866.3 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana ARGONAUTE 3 (AGO3), partial mRNA. (3841 bp)
misc_feature 1225..1437 /gene="AGO3" /locus_tag="AT1G31290" /gene_synonym="ARGONAUTE 3; T19E23.8; T19E23_8" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 1624..1995 /gene="AGO3" /locus_tag="AT1G31290" /gene_synonym="ARGONAUTE 3; T19E23.8; T19E23_8" /note="PAZ domain; Region: PAZ; pfam02170" /db_xref="CDD:460472" misc_feature 2107..3432 /gene="AGO3" /locus_tag="AT1G31290" /gene_synonym="ARGONAUTE 3; T19E23.8; T19E23_8" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex...
Synonym: ARGONAUTE 3; T19E23.8; T19E23_8
NM_102867.2 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana Argonaute family protein (AGO7), mRNA. (3443 bp)
gene="AGO7" /locus_tag="AT1G69440" /gene_synonym="ARGONAUTE7; F10D13.11; F10D13_11; ZIP; ZIPPY" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 1258..1410 /gene="AGO7" /locus_tag="AT1G69440" /gene_synonym="ARGONAUTE7; F10D13.11; F10D13_11; ZIP; ZIPPY" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 1444..1815 /gene="AGO7" /locus_tag="AT1G69440" /gene_synonym="ARGONAUTE7; F10D13.11; F10D13_11; ZIP; ZIPPY" /note="PAZ domain; Region: PAZ; pfam02170" /db_xref="CDD:460472" misc_feature 1906..3159 /...
Synonym: ARGONAUTE7; F10D13.11; F10D13_11; ZIP; ZIPPY
NM_105611.5 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana PAZ domain-containing protein / piwi domain-containing protein (AT5G21030), partial mRNA. (2565 bp)
LOCUS NM_001343695 2565 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana PAZ domain-containing protein / piwi domain-containing protein (AT5G21030), partial mRNA. ACCESSION NM_001343695 VERSION NM_001343695.1 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE...misc_feature 1..2562 /locus_tag="AT5G21030" /gene_synonym="T10F18.3" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" ORIGIN // REFERENCE 1 (bases 1 to 2565) AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E., Miyajima,N., Sasamoto,S., Kimura,T.,...
Synonym: T10F18.3
NM_001343695.1 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana dicer-like 3 (DCL3), mRNA. (4890 bp)
InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain...db_xref="CDD:350189" misc_feature 2588..3004 /gene="DCL3" /locus_tag="AT3G43920" /gene_synonym="ATDCL3; dicer-like 3; DICER-LIKE 3" /note="PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis...
Synonym: ATDCL3; dicer-like 3; DICER-LIKE 3
NM_001161191.3 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana dicer-like 3 (DCL3), partial mRNA. (4596 bp)
InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain...db_xref="CDD:350189" misc_feature 2323..2739 /gene="DCL3" /locus_tag="AT3G43920" /gene_synonym="ATDCL3; dicer-like 3; DICER-LIKE 3" /note="PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis...
Synonym: ATDCL3; dicer-like 3; DICER-LIKE 3
NM_114260.1 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana dicer-like 3 (DCL3), partial mRNA. (4743 bp)
InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain...db_xref="CDD:350189" misc_feature 2470..2886 /gene="DCL3" /locus_tag="AT3G43920" /gene_synonym="ATDCL3; dicer-like 3; DICER-LIKE 3" /note="PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis...
Synonym: ATDCL3; dicer-like 3; DICER-LIKE 3
NM_001161190.2 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana dicer-like 2 (DCL2), mRNA. (4628 bp)
InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Double-stranded RNA-binding (InterPro:IPR001159), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Ribonuclease III (InterPro:IPR000999), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase...CDD:460900" misc_feature 2740..3132 /gene="DCL2" /locus_tag="AT3G03300" /gene_synonym="ATDCL2; dicer-like 2; DICER-LIKE 2; T17B22.28" /note="PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis...
Synonym: ATDCL2; dicer-like 2; DICER-LIKE 2; T17B22.28
NM_001202869.2 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana dicer-like 2 (DCL2), partial mRNA. (4125 bp)
InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Double-stranded RNA-binding (InterPro:IPR001159), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Ribonuclease III (InterPro:IPR000999), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Dicer double-...CDD:460900" misc_feature 2377..2769 /gene="DCL2" /locus_tag="AT3G03300" /gene_synonym="ATDCL2; dicer-like 2; DICER-LIKE 2; T17B22.28" /note="PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-...
Synonym: ATDCL2; dicer-like 2; DICER-LIKE 2; T17B22.28
NM_001084632.1 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana dicer-like 2 (DCL2), mRNA. (4824 bp)
InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Double-stranded RNA-binding (InterPro:IPR001159), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Ribonuclease III (InterPro:IPR000999), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase...CDD:460900" misc_feature 2982..3374 /gene="DCL2" /locus_tag="AT3G03300" /gene_synonym="ATDCL2; dicer-like 2; DICER-LIKE 2; T17B22.28" /note="PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis...
Synonym: ATDCL2; dicer-like 2; DICER-LIKE 2; T17B22.28
NM_111200.5 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana dicer-like 1 (DCL1), mRNA. (5877 bp)
s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), Double-stranded RNA-binding (InterPro:IPR001159), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Ribonuclease III (InterPro:IPR000999), Double-stranded RNA-binding-like (InterPro:IPR014720), DEAD-like...DICER-LIKE 1; EMB60; EMB76; EMBRYO DEFECTIVE 60; EMBRYO DEFECTIVE 76; SHORT INTEGUMENTS 1; SIN1; SUS1; SUSPENSOR 1; T25K16.4; T25K16_4" /note="PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early...
Synonym: ABNORMAL SUSPENSOR 1; ASU1; ATDCL1; CAF; CARPEL FACTORY; dicer-like 1; DICER-LIKE 1; EMB60; EMB76; EMBRYO DEFECTIVE 60; EMBRYO DEFECTIVE 76; SHORT INTEGUMENTS 1; SIN1; SUS1; SUSPENSOR 1; T25K16.4; T25K16_4
NM_001197952.1 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana dicer-like 1 (DCL1), mRNA. (6276 bp)
s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), Double-stranded RNA-binding (InterPro:IPR001159), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Ribonuclease III (InterPro:IPR000999), Double-stranded RNA-binding-like (InterPro:IPR014720), DEAD-like...DICER-LIKE 1; EMB60; EMB76; EMBRYO DEFECTIVE 60; EMBRYO DEFECTIVE 76; SHORT INTEGUMENTS 1; SIN1; SUS1; SUSPENSOR 1; T25K16.4; T25K16_4" /note="PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early...
Synonym: ABNORMAL SUSPENSOR 1; ASU1; ATDCL1; CAF; CARPEL FACTORY; dicer-like 1; DICER-LIKE 1; EMB60; EMB76; EMBRYO DEFECTIVE 60; EMBRYO DEFECTIVE 76; SHORT INTEGUMENTS 1; SIN1; SUS1; SUSPENSOR 1; T25K16.4; T25K16_4
NM_099986.4 - Arabidopsis thaliana (thale cress) - NCBI - TAIR

Data Export:

Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.

Debug Info:

Redirect URI : http://ggrna.dbcls.jp/at/Argonaute+%22PAZ+domain%22
lang : en | div : | spe : at | query_string : Argonaute "PAZ domain" | format : html | download : 

0.000 | 0.000 | search_start;
0.087 | 0.087 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:Argonaute)%7C(nt:Argonaute)%7C(aa:Argonaute))?source=Arabidopsis thaliana (thale cress)?to=0&format=json
0.102 | 0.015 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:PAZ+domain)%7C(nt:PAZ+domain)%7C(aa:PAZ+domain))?source=Arabidopsis thaliana (thale cress)?to=0&format=json
0.173 | 0.070 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:Argonaute)%7C(nt:Argonaute)%7C(aa:Argonaute))%26((full_search:*:PAZ+domain)%7C(nt:PAZ+domain)%7C(aa:PAZ+domain))?source=Arabidopsis thaliana (thale cress)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.176 | 0.003 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]