GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-12-04 01:49:25, GGRNA.v2 : RefSeq release 226 (Sep, 2024)

LOCUS       XR_010601131            3877 bp    RNA     linear   VRT 05-JUN-2024
DEFINITION  PREDICTED: Chrysemys picta bellii NRDE-2, necessary for RNA
            interference, domain containing (NRDE2), transcript variant X10,
            misc_RNA.
ACCESSION   XR_010601131
VERSION     XR_010601131.1
DBLINK      BioProject: PRJNA1113615
KEYWORDS    RefSeq.
SOURCE      Chrysemys picta bellii (western painted turtle)
  ORGANISM  Chrysemys picta bellii
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira;
            Testudinoidea; Emydidae; Chrysemys.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_088794) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_011386835.1-RS_2024_05
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 05/29/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3877
                     /organism="Chrysemys picta bellii"
                     /mol_type="transcribed RNA"
                     /isolate="R12L10"
                     /sub_species="bellii"
                     /db_xref="taxon:8478"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="USA: Mcleod County, MN"
     gene            1..3877
                     /gene="NRDE2"
                     /note="NRDE-2, necessary for RNA interference, domain
                     containing; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 16 long SRA reads, 1 Protein"
                     /db_xref="GeneID:101935874"
     misc_RNA        1..3877
                     /gene="NRDE2"
                     /product="NRDE-2, necessary for RNA interference, domain
                     containing, transcript variant X10"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
                     /db_xref="GeneID:101935874"
ORIGIN      
catttcccagcatgctggggcagcgagcggcgccatcttgcctcgttgggcggccggggtctccttgggaagcaagaggggaagaagctgtggttcagcccatggctcttttcccggcctttgccggcgccgttgagcccggggagacgccagccagtggtagcgagggctccaggagagaattggactggcttagcaatccaagcttctgcacagaagatgcactgaatctgcaccagcgcactgcaaaggctgcagatcttactcctgagagatcacaacttataaggagtccttcaagatcagagctctcaggaggaagtgataccaatgaagatctaaaaaaatcaactaagaaaaggaaagggaaaaagaaaaagcatcaccaccacaagaaaagaaagaagaaaaccagagaggaatcaagtaacagtgagtcagactcggacagtgagtgtatgaaggataaacctagaggaagtgacacaaaccatgaaagagaagcagcaacgttgaatctagaagacataacatcaaatggtgccaccagtcgctttgtttggcttgaggatattcaggctttgacagcagaaaccttcagaacagacaagaatccagaccctgcaaactgggaatacaagtcactgtatcgaggagacatagcaagatacaagcggaaaggtgactcatgccttggtattgacctaaagaaacaatgtataacttgggaaagttccatggtagaaaagaaacagtcccacaagcgacctgaacgctacttcaagaagaatagtgtgcagttattgagcacagatggaattcctgtttacagtaaaagccaaactacttcatctggtctaagcacttttataccgctttcacaactggatagtgatgctcctcctacaacaacgtatgtgaatcctcttgggatttatgatccattgaccacactctggttgcaaggaaaaggtccctcagagcatgagactttaaagcagcaggcatcccaagagaccagtgagaatgttaactctgttctaattgcaaaagtggaagaatataataggacggtcagagaaaatccaagagatgttcacacttggatggaatttgtttcttttcaggatgaaataatgagaggacccagcccttatgccatcaaagagggagagcaggaaataaggagaaaatcattcaagctaatcctagaaaagaaactggccattttagagagagctattgaaagcaacccaaatgatgttgatctgaaacttgccaagctgaagctttgtacagaattctgggaaccatcaactttgatcaaagaatggcagaaactggtttttttgcatcccaataatccagtcttgtggcagaaatatctcttattttgtcaaagtcagttcagcaccttttcagtttcaaaagtccatagtttatatggaaaatgtttgagcactttggcagctgtacaggatggcagcatggtgtcacatcctgtactgcctggcacagaggaagctatgttagctgtctttcttcagcagtgccattttcttagacaggcgggccattctgagaaagctgtgtctttgttccaagccctggttgatttcaccttctttaaacctgacagcgtaaaagatctgccaacaagaggacaggtggagttctttgaaccgttttgggatagtggagagcctcggtttggagaaaaaggagcaaaaggctggaaatcatggatgcatcagcaagaaaagggaggctggattatcatcaataaacctgatgaggatgaggaagatgtagatgaagatcaagaaataaaggataaaactctacctaaatggcaaatttggctggacattgaatgttcccgtgaaacaaggcattggctgccttggcgacctgacaaaactaaaaagcagactgaagaagattgtgaagacccagagagacaggtattgtttgatgatcttgggccatctttaatcagactttctagtccagatcttcagtttcagctgctatactcatttctgcaatttgtgggagtcccatgtgggtgtagtctctttccttcaaatctctatatcgctatggatgagaacaatatttttgacactgggcagtctgaaaagccactgacttcttttgactcactgctttctggagtcaatagtattggccatatggacacaatgaccagagggagacagcgcatgggacactgtaaggaaggagaggagttcatacagaatgtctttcatttaatattgccgttgttttcaggaaaggaaaagtcacacctttctgtctgttggctacaatatgaaatctcaaaggttgttcagtgtctccaagcaaaaaacaagaagaaactgaagtcacagggaaagaaaagcaaaaaactagccaagaatctccttaaggcatctgaaaaccgaaacaacctttccctctggaaactgtatgcttacttggaatggttacttggcaacactgaagatgctagaaaagtgtttgatacagctctttgcttggcaggcactgaaggaatgagaaatatccaactctgtaatctaagcctgctttatgcttcactggaagtggagctactagagagtttggaggaaactgttatgtcacgtgctttacatatattgaccaaactggctgaaagtgggccatatgtaccttatactgggcaagtgctatctgtgaatatcttgaaagctcggaaggcatatgagcatgcgttgcaagattatttaaatgaaagtccagtctctaactgggatcaggccagcagttctagccaactgagtagatgttggagaaatacattcaacaattcctgaaactgggttaacaaatcggataaaagctttatttgaacacgcaattcagagtgaaaatggtgcccattgtccattgctgtggagaatgtatttgaactttctgttttctctaggaaataaagaaaggagcaaaggactgttttataaagcccttcagaactgtccctgggcaaaggtgctgtatatggatgcaatagagtattttccagatcaactgcaagagaccctagatctaatgactgaaaaagaattgagagtaagggtacctatagaagaactggaattgctactggaagattaaaagaagatggtgaaagaacaacaacatcaacaaaaaagaaaaagaaaaaacaagcgaaaaagggaatgttgatgtccaaaagtttgtcttcaactattatctttgactgggacttcaatggattatgcacatgtttttcttactaagaataatttgttaaaaactttactattactatgccacagtactagctgtaaatatcctagaatttgttcctcatcttgtagtgggctgctttacacatgtaaatacatctgtttttctggaaagtacagcaaaatccacaaaatgatacttaacgataattaattggctattggaccccacctacaactcgtatgctacagtttaatacagccattcccttgaattcagtggaatgtcaagacatgcctactacaatttgctaggcagcacaggaagtaaacatctgccaaatgtaccctttacaatctgctgctgtcaacaggctatatacatgcacaccaagcaagacaaatttataaatatccacatatgttccagtatcttgctctctgtacaaaacaagaagacaagtaaaactcttgaaaaaatatccaaacagttagctcaattgataaactgttaaatgccaaaacttgtttgacaaggtatcagttttgtctttgcatgtgtaatgatatgacaattctaatgtaaatatttattaaaacatacttaaatattttaa
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]