ver.2
Home
|
Help
|
Advanced search
Previous release (v1)
2025-10-24 16:15:33, GGRNA.v2 : RefSeq release 232 (Sep, 2025)
LOCUS XR_009984715 2512 bp RNA linear INV 05-FEB-2024
DEFINITION PREDICTED: Saccostrea cucullata uncharacterized LOC134232134
(LOC134232134), ncRNA.
ACCESSION XR_009984715
VERSION XR_009984715.1
DBLINK BioProject: PRJNA1071555
KEYWORDS RefSeq.
SOURCE Saccostrea cuccullata (small rock oyster)
ORGANISM Saccostrea cuccullata
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia;
Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae;
Saccostrea.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_026931306) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Status :: Full annotation
Annotation Name :: GCF_032062105.1-RS_2024_01
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 10.2
Annotation Method :: Gnomon; cmsearch; tRNAscan-SE
Features Annotated :: Gene; mRNA; CDS; ncRNA
Annotation Date :: 01/31/2024
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..2512
/organism="Saccostrea cuccullata"
/mol_type="transcribed RNA"
/isolate="Sc308-1"
/db_xref="taxon:36930"
/chromosome="Unknown"
/tissue_type="Abductor muscle"
/geo_loc_name="Australia: WA, Karratha"
/collection_date="2022-03-29"
gene 1..2512
/gene="LOC134232134"
/note="uncharacterized LOC134232134; Derived by automated
computational analysis using gene prediction method:
Gnomon."
/db_xref="GeneID:134232134"
ncRNA 1..2512
/ncRNA_class="lncRNA"
/gene="LOC134232134"
/product="uncharacterized LOC134232134"
/db_xref="GeneID:134232134"
ORIGIN
tgctgaccaagtttgatgatcgtaggtctgaaggtaatcaaaatatgccttttaaacaatatgaaaacatatgcctgcaaaattcaaaaagtaggtcacagtgacctactttttcataaatatgttttaaggtcccaagatgcagcaatttacaagatttgatgattctaaccctctcagtgtctgcaatgatgggattaaatgttttaaaaaggataagtcataaagttcaaaaagtaggtcaaggtgacctacttttaagttgacgttgttcaaggacccaagatgcatcaactaacaaagtttgatgatcataggccttaaagtgtccaaaatatgccttcaaatcaatttgaaaacaaatgcccgcaaaattaaacaagaggcccaagggccttgaatcgctcttctgataaattgtacaatctatcacttctatttgaagcctctaaccctgagtatcctaagacccaagttgcatcaactgacaaagtttgatgattcttagccaattaggactgaaaatattttttataataaagctataaaaaaccataagtacattacagtgacctatattaagattgaagttttctgaagattcaagatgcattaataaacaaagattgaagattctaagccaataagtatttgagatttttaaaagtaggtcaccatgacctactttttggtcgacaatctctaaaaaccaaagatgcatcaacaaacaaagttaaaccagttagtaccgtagatacttaaagaaagcctgaaatgtccaaaaattaggtcaccgtgacctactttttggacatcattctcccaaaacccaaagatgcctcaacttacaaagtttgatgattctaagccaataagtaccgtagatacttaaataaagccataaaatgtttaaagtaggtcaccatgacctactttttggtcgtcactctccgaaaacctaagacgcatcaactcacaaagtttgatgattctaagccaataaatacctaagatacttaaataaagccataaaatgtcgaaagtaggtcacagtgacctactttttggacatcattctcggaaaacccaagattcatcaacttataaagtttgatgattctaagccaataagtactgtagatacttaaataaagccataaaatgtcaaaaataggtcaccttgacctactttttggtcgtcactctccgaaaacccaagacgcatcaactcacaaagtttgatgattctaagccaataaatacctaagatacttaaataaagccataaaatgtcgaaagtaggtcacagtgacctactttttggacatcattctcggaaaacccaagattcatcaacttataaagtttgatgattctaagccaataagtaccgtagatacttaaataaagccataaaatgtcaaaagtacgtcaccatgacctactttttggtcgtcactctccgaaaacccaagacgcatcaactcacaaagtttgatgattctaagccaataaataccaaagatactaaaatatagccataaaatgttgaaactaggtcaccgtgacctttattttggtcgacatttttcaaagtcacaagatgcatctgctgaccaagtttgatgatcctaggttttgaaggtaatcaaaatatgccttttaaacaattcataaacaaatgcctgcaaaattcaaaaagtaggtcacagtgacctactttttcataattatgttttaaggtcccaagatgcatcaatttacaagatttgatgattctaaacctctcagtgtctgaaataattgggattaaattttttaaaaagaattagtcataaaattcaaaaagtaggtcatggtgacctacttttaagctgacgttgtttaaggacccaagatgcatcaattgacaaagtttgatgatcataggccttaaagtgcccgaaatatgccttcaaatcaatttgaaaacaaatgcttacaaaatttaaaaagtaggtcaccatgacctactttttcataaatatgttttaaaatcccaagatgcatcaatttacaagatttgatgattctaaacctctcagtgtctgaaataattggattaaatgttttaaaaagaattagtcataaaattcaaaaagtaggtcaaggtgacctacttttaagctgacgttgttcaaggacccaagatgcatcaactgacaaagtttgatgatcataggccttaaagtgcctgaaatatgccttgaaatcaatttgaaaacaaatgcttacaaaatttaaaaagtaggtcaccgggacctacttttgagttaacatgatgtgatgtcctgagatgcatcaacttacaagatttgatgatcctagtcataatagtaagcaaaatataaacatttttattatttgtaaatttaggtcaactttgaagtgaccttgagaccacgccctttgccccagggtcatgccttgaacaatttttaatcttcaacatatcctgatccttgtatgtaag
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]