ver.2
Home
|
Help
|
Advanced search
Previous release (v1)
2025-10-31 08:05:52, GGRNA.v2 : RefSeq release 232 (Sep, 2025)
LOCUS XR_008802991 2779 bp RNA linear INV 18-MAY-2023
DEFINITION PREDICTED: Ostrea edulis uncharacterized LOC125683587
(LOC125683587), ncRNA.
ACCESSION XR_008802991
VERSION XR_008802991.1
DBLINK BioProject: PRJNA970818
KEYWORDS RefSeq.
SOURCE Ostrea edulis (European flat oyster)
ORGANISM Ostrea edulis
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia;
Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae;
Ostrea.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_079164) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Status :: Full annotation
Annotation Name :: GCF_947568905.1-RS_2023_05
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 10.1
Annotation Method :: Gnomon; cmsearch; tRNAscan-SE
Features Annotated :: Gene; mRNA; CDS; ncRNA
Annotation Date :: 05/10/2023
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..2779
/organism="Ostrea edulis"
/mol_type="transcribed RNA"
/db_xref="taxon:37623"
/chromosome="1"
gene 1..2779
/gene="LOC125683587"
/note="uncharacterized LOC125683587; Derived by automated
computational analysis using gene prediction method:
Gnomon."
/db_xref="GeneID:125683587"
ncRNA 1..2779
/ncRNA_class="lncRNA"
/gene="LOC125683587"
/product="uncharacterized LOC125683587"
/experiment="COORDINATES: polyA evidence [ECO:0006239]"
/db_xref="GeneID:125683587"
ORIGIN
cgtgaaggcagatattatttgaagcgtgaaggcagatattatttgaagcgtgacgaaaagaagcaccccattgagagatgcaagcggcactgacagacctaaccgttattcaacttattgactcatggatagagggtgtcctcaaaagatctgtgtggatcctggaacagagaatggaatcgttgcagcatttcattgaatcctgtttagaaggaaatggcaattcagttacttagggaaaatctggagcaaatcaaggtgcttcacaatacttctatgcagttcaacaaaatacagcgcctcatttacaaagactcgtatttaaacaatttccaagatattgatgaagattttacatgtgtggcaacatctattttgcatcagcatgatctgcctttgcctgacaccttgagagactggacctctactcatcatctctacatatatctgagggagtgcatgatgcatttgaagattctttaacatcataagatgttgtagaatatacatttgtttccatgactttgtacacttgcttttattgccagctgatttctgttccatagttttatgtatttaactaatcagatacattttcatgtattcacattttctgggggtgtttttttatccttgaaatattttaaatgtggagctttacagaatttcatttggtatgaatgctaaaggctattcatgaacagaattttttctttgaactctcccatcccactccaccatcccctaaaaaaacatccatgacttttgtccaagccatacctttgtactgttaaacttgctaaccacaggagtttacagaaatttttagctcttctgagccaaaggctcaaagagctaatgctatggccatttgtgcggtgtgcgtaaactttttagaaaaagggctataactcaagaaccccttggccaatttttttcaaatttgttacagggtatcattggcccaagggctttcatacatactaaatagagggatgtgaccatttaacaaggggagataatcaggaaaatacaaacaaaagtagtggttgctaaaaaatcttcttctcaagaaccacagggcagattatcaccaaacttacacataaggatgaggatatgttgtagattagaaattgttcaaggcattaccctggggcaaagggcatggtctcaaggtcacttcaaagttgacctaaatttaaattttttttaaattccttaaatcttagatgttttagtcattataaggactaggatcatcaaattttgacagttgatgcatcttaggaccttgtgtcaagttgtctcaaaagtaggtcacggtgacctactttttgaattttgcaggtatttattttaaaattaattttgatgcatatcttggacactttgaagcctatgatcatcaaaacttgtcagttggtggatcatgggaccttgaaatgcgtcaactgaaaaataggtcaccgtgacctactttctgaattttatggcttatcatttatagatatattttaagttgttatttcaaataccgagaggtttagaatcatcaaatcttgtaagttgatgcattttgaggccttgaagcatatttataaaaaaaaaaaaaaaaaagtaggtcacagtgacctacttttttaattttgcagatattcaaatttcacattttcaattttagatgcatattttgggcactgtaaaacctaggatcatcaaactttgtcagttgatgcgtcttcagtcttcggtttgtgtcgaccaaagagtaggtcaccgtgaccttcttttggtatttgacagctaaattactatatttcagacactatttgacctataatcatcaaactttgtcagttgatgcatcttgagtcttcggagtgtatcgaccaaaaagtaggtcactgtgacctacttttggcatttgacagttatatttatatatttcagtcactaattgacctacaatcatcaaactttgacagttgatgcatcttgagtcaacggagtgtgtcgaccaaaaagtaggtcaccttgacctacttttggaatttgacggctatatttatatatttcagatactgtttgacctacagtcatcaaactttgtcagttgatgcgtcttgcatgttcaaagggtgttcaccaaaaagtaggtcaccatgacctacttttggaattggacggctatatttatataattcagatactatttgacctacagtcatcaaactttgtcagttgttgggtcttgcatgtttgaagggtgttgacgaaaaagtaggtcaccttgacctacttttggaatttgacggctatatttatatatttcagatactatttgacctacagtcatcaaactttgtcagttgatgggtcttgcatgttcggagttcgctgaccaaaaggtaggtcaacatgacctacgattggaatttgacagctatatttcaatattcagatactaattggcttaaaatcatcaaactttgtcagttgatatttcttgggttctcaaaatgtgtaaaccaacaagtaggtcacattgacctactttttttgaattcttaggatttaactaaagatttagaatactaataggctaagaatagaaatggtggggttgtacaatttatcagaagagcgattctaggcccttgggcctcttgtttttatttgctatgcatttatatattcaaaatgtttagcaccttctgatatgtattattaatgtcaaatatgtatgattgtgtaataaattatatacatgtattta
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]