2024-04-25 15:08:34, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XR_006381732 3739 bp RNA linear MAM 13-OCT-2021 DEFINITION PREDICTED: Neovison vison NRDE-2, necessary for RNA interference, domain containing (NRDE2), transcript variant X2, misc_RNA. ACCESSION XR_006381732 VERSION XR_006381732.1 DBLINK BioProject: PRJNA769404 KEYWORDS RefSeq. SOURCE Neogale vison (American mink) ORGANISM Neogale vison Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Mustelinae; Neogale. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_058103.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Neovison vison Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3739 /organism="Neogale vison" /mol_type="transcribed RNA" /isolate="M4711" /db_xref="taxon:452646" /chromosome="13" /sex="female" /tissue_type="tongue" /dev_stage="mature" gene 1..3739 /gene="NRDE2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:122893993" misc_RNA 1..3739 /gene="NRDE2" /product="NRDE-2, necessary for RNA interference, domain containing, transcript variant X2" /experiment="COORDINATES: polyA evidence [ECO:0006239]" /db_xref="GeneID:122893993" ORIGIN
cgcgaaggcctcactgtcggcgtgcgctctccggcgccatttctgtagaggggaacggcagtgcggcctgtaatcatggcgctgttcccggcctttgcgggcattggtgaggctcccaatagcggcagcgccaggaaagaattagattggctgagcaacccgagcttttgtgctggagccgtaacctctctgagccaacagcctgaggaggccaccgccctggtttctgaagggtcatcgccgacgaggagtcctctgaaatcagagacttcagatgaaagtgacgctaacagaaagcccagacaaacaagcaggaaaaagaagaaagaaaagaagaagaagaggaagcatcaccacaagaaaaccaagagaaaacgtgggcaggctagtagcagtggctccgagccggatagtgagcctgaaaaggacaaaacttccagaagcactggagacagtagaagggaatccgagaagccaaggcaagaaagtcatgctgctgctgatgttgggcatcgctttgtttggcttgaggacgtgcaggctctgacaggagaaaccttcagaacagacaagaaaccagatccggccaactgggagtataagtctctctaccgaggagacatagcaagatacaagaggaaaggagactcctgccttggcattaaccctaagaagcagtgtatatcctgggagggggcttccacagaaaagaagcgttcgcacaagcatgttgagcgctattttacgaagaagagcgtgggattgatgaacattgacggagttgccgttggcagcaaaaccgaacctccgtcatctgagccgctctcctttatccccgtgaagggcccagatgatgcgcttcctcccattacaacctggttgaaccctctgggcatttacgatcagtccaccacgcagtggttacaaggacagggtccttcagagcaagaatcaaagcagccagactcagagatggatagagagagcgcactgctcaaggccaaggtggaggagttcaaccggagagtgcgtgagagtcctcgcgacgtgcagctgtggatggcctttgttgcttttcaggatgaggtcatgaaaagccccggcctgtacgccctcgaggagggagagccggagaagcggaagaggtctcggaagctggtgctggaccggaagctggccatcctggagcgggccatcgagagcaaccagagctccgtggagctgcagctggccaagctggagctgtgtgccgagttctgggagccctccgcactgctcagggagtggcagaagctgatattcgtgcaccccaacaagacggccctgtggcagaagtaccttttattttgccaaagccagttcagcaccttcaccgtcaccaagatccacggtctctatggcaagtgcttgagcacgctgtccgcggtgctggacggcagcatcctgtcgcaccccgcgctgcctggcaccgaggaggcggtgttcgctctctttcttcagcactgccacttcctgcggcaggctggccactcggagaaggccgtcgctctgttccaggccatggtggacttcaccttcttcaaacctgacagcgtgaaagacctgcctaccaaaggacaggtggagttctttgagcccttctgggacagcggggagccccgggctggggagaagggcgcccgcggctggagagcgtggatgcagcagcaggagcgaggcggctgggtggtcatcagtccagatgatgacgatgatgagccagaagacgaggaccaggaaatacgagataagagtctgcccaggtggcagatctggcttgccgctgagcggtcccgagatcagaggcactggcggccgtggcgccctgataagaccaggaagcaaaccgaggaagactgtgaggacccagagagacaggtgctgttcgatgacatcgcacagtctctgatccagctctccagaccggatcttcagttccagctggtcacagcctttctgcagttcctgggtgtgccttgtggcttcagcaccccggcctcctgtgtctacttggccatggatgagaatagcatcttcgataacgggcttcatgatgaaaagccattgactttcctcaacctctccttcaatggcatcagctgtgttggccgctcagaccccctgggctgccgtcgctggacccgaggtcacagtcgagagggcgaggaattcatccgcaatgtctttcaccttgtgatgcctctgttttcaggccaggagaggtcccagctctgcttctcctggctacggtacgagatggcgaaggtcatttggtgtctgcacactaaaaacaagaagaggttaaagtcacaaggaaagaactgcaaaaaactcgccaaaaacctcctcaaggagccagaaaaccgcaacgatttctgcctctggaagcagtatgcacatctggagtggttgctcggcaacacggaggacgccaggaaggtgttcgacacggcgctcagcctggcgggcggcggggaaccgacggggtccgagctctgggagctcggcctcctctacgcgcagctggagctggagctggagctggagctcacggccgacctgaggggggccaccgcggcccgggccgtgcacgtactgaccagactgacggagaatgggccctatgggccctactcggggccggtctcggccgttcatgtcctgaaagcccggaaggcttacgagcacgcgctgcaggactgcctggggcagagctgtggctccgctccagctcccgccggccccgctcgccgcctcgcgagcctggccaagtgcttcctgctcttccagtatgtgactgtaggcatcgaggcggccgtgcggctctatgagcaggtgtgtgcggggctgcggggctcggtgtgcccgggcggcgcactcgaggctgtcacgctgctgcacacgggcttgctccggttccacaccagggtccacgtttaccccctggctcccctgcgccaggcgctctcggaggcgatacagctgtacccagacagccagcttctctggagggcctacatacaggttcagagcaagtcccatgcagccagtaagaccagaaggttcttcgatgctattaccaggtccgccaaagccttggagccttggttgttcgcgattgaagctgagaaaatgaggaagaggctggtggagaccgttcagagggtggatggcagagaggtccatgccacgattcccgagaccggcttggctcatcggatccgagccctgtttgaaagcacgttgcagagtgaccatggccgcctgtgccctttgctgtggagaatgtatttgaactttttggtttccttgggaaacaaagaaaggagcaaaggcgtgttctacaaagcacttcagaattgtccttgggcaaaggcgctgtacctggatgccgtggagcactttcccgaagagatgcaggaggtcctggacctgatgacggagaaggagctccgggtgcgcctgcccctggaggagctggcgcttctgctggaggactagagacgaggagggaatgggccctgccttccaggcctcgtcgcctgccctgccggagctgggatgcacaagattggggacgcctgggtacaagagctgtccagtcaaaatacattgctgcaggcgagctgaggaacaccccccgcaagaagaactgtgaaatattagtgatattaacatgtggcaacaagcattttttcca
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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