2024-04-26 11:46:35, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XR_006293469 6813 bp RNA linear MAM 10-SEP-2021 DEFINITION PREDICTED: Prionailurus bengalensis NRDE-2, necessary for RNA interference, domain containing (NRDE2), transcript variant X5, misc_RNA. ACCESSION XR_006293469 VERSION XR_006293469.1 DBLINK BioProject: PRJNA756971 KEYWORDS RefSeq. SOURCE Prionailurus bengalensis (leopard cat) ORGANISM Prionailurus bengalensis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Prionailurus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_057355.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Prionailurus bengalensis Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6813 /organism="Prionailurus bengalensis" /mol_type="transcribed RNA" /isolate="Pbe53" /db_xref="taxon:37029" /chromosome="B3" /sex="male" /cell_type="Fibroblast" /tissue_type="Fibroblast" /dev_stage="adult" gene 1..6813 /gene="NRDE2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 34 samples with support for all annotated introns" /db_xref="GeneID:122469435" misc_RNA 1..6813 /gene="NRDE2" /product="NRDE-2, necessary for RNA interference, domain containing, transcript variant X5" /experiment="COORDINATES: polyA evidence [ECO:0006239]" /db_xref="GeneID:122469435" ORIGIN
cgggtcaagccccagggagtgcgagtgggaaaaaccacacttcccagagtgcaccgcaaccgcgaaggcctcactaccgccgtccgctcgccggcgccatttctggagagggggacggcggtgcggcctgcagtcatggcgctgttcccggcctttgcaggcattggtgagacttccggtagcggcagcgccaggaaaggagccctctgaaatcagagccttcggatgaaagtgacactaacaaaaagcccaaacaaacaagcagaaaaaagaagaaagagaaaaagaagaaaaggaagcatcaccacaagaaaaccaggagaaaacatgggcggtccagtagcagtgggtctgagccagatagtgattctgaaaaggataaagcttccagaagcattagagacagtaaaaaggaatccgagaaaccaaaccgagaagggaacgccgtcgctgatactgggcaccgctgcgtctggcttgaggacgttcaggctctcacaggggaaaccttcagaacagataagaaaccggatcctgcaaactgggagtacaagtctctctaccgaggagatatagcaagatacaagaggaaaggagactcctgccttggcattaaccctaagaagcagtgcatatcctgggagggggctgccacagaaaagaagcactcacacaagcatgtcgagcgctatttcacgaagaagagcgtgggactgatgaacattgacggagtcgccgttggcggtaaaaccgaacctccctcatctgagccggtctcatttatcccagtgaagggctcggatgatgtggttcctcctgttacgacctggttgaaccctctggggatttacgatcagtccaccacgcagtggttacaaggacagggtccttcagagcaagaatcaaagcagccagactcacagacagaccgagagcatgccctgctcaaggccaaagtggaggagtttaacaggagagttcgggagaatccccgggatattcagctgtggatggcatttgttgcttttcaggacgaggtcatgaagagccctggcctgtatgccatcgaggaaggagagcaggaaaagcggaagcggtctctgaggctcattctggagaagaagctggccatcctggagcgggccatcgaaagcaaccagagcagcgtggacctgaaactcgccaagctgaagctctgctccgagttctgggagccctccgccctggccaaagagtggcagaaactgatctttctgcatcccaacgatacagccctgtggcagaaataccttttattttgccagagccagtttagcaccttcacggtgtcaaaaattcacagtctgtacggcaagtgcttgagcaccttgtctgccgtgaaggacggcagcatcttatcgcaccccgccctgccgggcaccgaggacgccatgtttggtctctttcttcagcagtgccacttcctgcggcaggctggtcactctgagaaggcggtctctctgttccaggccatggtcgacttcaccttcttcaaacccgacagtgtgaaagacctgcccaccaaaggacaggtggaattctttgagcccttctgggacagtggggagccccgggttggcgagaagggcgcccgaggctggagagcgtggatgcaccagcaggagcggggcggctgggtggtcatcagtccagatgatgatgatgatgagccagaagatgaggaccaggaaataaaagagaagagtctgcccaggtggcagatctggcttgccaccgagcggtcccgagaccagaggcactggcggccgtggcgccctgataagaccaagaagcaaaccgaggaagactgtgaggatccagagagacaggtgctgtttgatgacatcgcacagtctatgatccgtctttccagccaggatcttcagtttcagctggttgcggcctttctgcagttcctgggcgtgccttctggcctcagccctccagcctcctgcctctacctggccatggatgagaacagcatcttcgatgacgggcttcatgacgaaatgccactgacttttctcaacctttccttttccggtgtcagctgtgttggctgctcagacccgctgggccgccggcgctggacccggggtcacaatcgagagggcgaggagttcatccgcaacatctttcaccttgtgatgcctttgttttcaggccgggagaggtctcagctctgcttctcttggttacggtacgagatcgagaaggtcatttggtgtctgcacactaaaaacaagaagaggctaaagtcacagggaaagaactgcaagaaactagccaaaaatctcctgaaggagccagaaaaccgcaacaatttttgcctctggaagcagtacgcacatctggagtggctgcttggcaacaccgaggacgccaggaaggtgttcgatgcggcgctcagcatggcggggggcagagacctgagggaccgtgagctgtgtgagctcggcctcctctacgccgggctggaggcggagctgttgcaggacccgagaggggccgccacggcgcgagccgttcacgtactgaccaggctgacggagcaggggccctgcgggccctactccggacaggcgctggccgttcacatcttgaaagctcggaaggcatacgaacacgcgctgcaggactgtttgggcgacagctgtgtctccgctccggctcccagcgactccttcgaccgcctgactagcctggtgaaatgcttcatgctctttcagtacttgaccgtagggatcgacgcggccgtgcgggtgtacgaccaggtgcttgcaaaactgaagggctctgttcctccaggggcctccggcccggaggacggtgcccgcgcccagggcccccacggcgcgctggaggccgtgacgctgatgcacacgagcctgctcaggttccacacgaaagtcagcctttaccccctggctcctctgcgacaggctctctccgaggcgttaaggttgtacccaggcaaccaggtgctttggcgggcatacgtgcagattcagagcaggtcccacacagccagtgagaccagaagatttttcgacgcggtcaccaggtctaccaaactcttggagccttggttgtttgcgatcgaggccgagaaaatgaggaagagactggtggaaagtgttcagagggtagatggtagagaggtccacgccacaattcccgagaccggcttgacacatcgcatcagagccctgtttgaaaatgcgttgcggagcgacaacggcagccagtgccccttactgtggaggatgtacctgaattttttggtttccttaggaaacaaagaaaggagcaaaggcgtgttctacaaagcacttcagaattgtccctgggcgaaggtgctgtacctggacgccgtggagcacttccccgaagagatgcaagaggtcctggacctgatgacggagaaggagctccgggtgcgcctgcccgtcgaggagctggcgcttctgctggaggactagaccaggagggaacgggccctgccttccgggcctctcgcccgccccgcccccgacccccccaccggagccaggatgcgcaggactgggacgcatgtgtgtgagcatgtgtcacgagacctccgcttttcaagtttcttaattcttagtaatttgggtctgggttatcagtcttttacctcttgcacattgtttggatgtgtgaaggacacaaaaccattgcttacatattgtatatgtgaatgtgtgtacgtagggaacaatcctgccaagtgaaaactaaacccgtcgtggctggtgtgcgggaggtctgttccactctgcccggccgtgaacgttccccactggcacccttggtggtcctgccatcgtggtaggaaaggtctggtttctgagcactcggacctctccccgcagctggtgaggagagcagcttttgcccttaagagccgtttaaaacttggtgttctggcctcgctcccattttaaaagtttctcattatttgctaggctcttgatgccacctcccttctgtggaccaggagcatcacctgggggcttgttagagatgcagcctccgggcccacctcagcccttctgagtcagggcctgcacttgaacaggaccccctggggactcaggtgcaccaagtgtggggggcaccgcccaaaggacccctgcggcaggggagtgtgcaggcggccatctgagaagggcagagtggagccagcgccttcccaccaaacccacccctgcctgggggctgtgacacagaggcccagacccagacctgccaggccacattcttgttttgatttctgagggtatgaatggaacgaaacgtaaatatccacattcagaccactttcttctgaaaaggacacgccttgcagtcattattaaggacactgaactgggaggaaattgctctatcttccctgaggtcctgctctaagagaaacgcggacagctgctgactctatcgtgatctctagaatggctgaagttgtatttctttggcatctcatccagagaagcccgtgtcgtggaagagaatcttgcctagaaaccagcggacactggttggggagaagggcggcgggtcagggcacccaaggaaggtggctggccagccaagtggacgcttgcctcaatctgccccgcttccttcgcggcttcaagactgaactgttcaagagaggggagaagtgccggaaatggatgaagaaagggagccacgttcccgggccacagatgccgttacacctggaaacttcgcggcaacagagcacacgtccagttcacctacctacactgaggagagagcatgcgttctggctaaatggttgtctcgcaacacttgccaaaagtaaaacaacccacacaacatgatgtggtaaaaccacaatctcagcactaagtttctatctggttgtgaccctcaggatatttcaaatggttcagcgaaaaagaaagtgaacagaatgataaagcaaagaggtaaaacggtaacacttggtgaaccgaggtgatgggtatgtgggcattcactattgttgcaacttttctgaagacttcaaatttcctaaaatacaaagttcatgcaaaatttaaaaactctctttaagttgaagttgccgacaaagaccctaacctagttctacagatgccaacgatacgcagttcagtgcaggcaccggcgtgaaaaggccccacacgcgccgtccctacctgacggtggcacttacccctacctgacagaaacccaggtcctcacatacagagcaggctggccccacactcagtgctgccgagcctcgccctaattctggacatctgggaagaaacgtcctcacgcgcacacacaaccaagaggtacagtccagcccaggttctcaccttgatgtcggccccagagaggtcatctttagccatgatcaagtcgtccagggtcacatcatcggccagcgtcatcctgcttgtgtggatctgaaagatgcgcctcttggtcttttcatcgggcagggggaactcaattttcctgtcaatgcggcctgcgggtataaaaggtttccagtcacacccctgtggctccccccaggctccgctgtggctcgggaggcctgtctcctcacacctgcagcttcagagggaaacttcccttgtgggaagggtccaaatcttgaaaagtgaacactgctctttgtaaatacccacgtttgaattcatcccgtttaaaagaaatcctctctcctctggtaccttcagaaacacacaaactagctactgctgcttttggtgctacccgaatgcgaaattaactggagctaccagaggagctatttcttcagaaaaaagagtattcattacgggaaagagaaacggtcacgacttaagactgcgatgacaagggccacactacacctactacatcatgctcttagccattacctcagtggaacgcagcttttgggaagtcattctacacttcaataatgtacttgccttgacgtgtatcacttttaaatcccccgaaagtgcacttaaacacaaacacatataaacacactcactctccgtgatgggacaaaagcaaatctgacctggtctgataagtgctggatccaaagtttctatccggtttgtggccatgataactttcacgtcaccccttgaatcaaatccatccaactggttcaacagttccaacattgttcgctggatttctctttcaccaccggaatttgaatcgtatctttgaaaaagaagagaagggatgaaaaccgaactgatctcctgctgaaggggaattataaaaacacctctgatgccctcaattctagcaacaaaatcagcacagcctcccaaccaccacataatcttaaactgtagatgttttgtgcctgagatggcatcattaattcagattgcacgtttggtatctgagcccccgacccaaccatgagctcctggaaagccttgtgacaatggctgcgtccccagagtgcagatgatgcctggctcagagtggaaactcaaggcatggctgcacactaatctccagacggtcacgactcccgggtggttgtcacctggcaccccggagcagagcctaaagcgtccacagccacgtacagaaggagccaaggcaaacccatgtgcgggccacgcaggcagtgctccgtgatcattctcagacgagctacaaggtctttacctctaaatgacacaaagagaaaaatgtacctttttgttccaatggcatcaatttcatcgataaacacgatggatggcg
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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