2024-04-23 19:26:56, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XR_005225582 3479 bp RNA linear VRT 22-SEP-2021 DEFINITION PREDICTED: Chelonia mydas NRDE-2, necessary for RNA interference, domain containing (NRDE2), transcript variant X3, misc_RNA. ACCESSION XR_005225582 VERSION XR_005225582.2 DBLINK BioProject: PRJNA675851 KEYWORDS RefSeq. SOURCE Chelonia mydas (Green sea turtle) ORGANISM Chelonia mydas Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_051246.2) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 10, 2021 this sequence version replaced XR_005225582.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Chelonia mydas Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3479 /organism="Chelonia mydas" /mol_type="transcribed RNA" /isolate="rCheMyd1" /db_xref="taxon:8469" /chromosome="6" /sex="male" /tissue_type="blood" /dev_stage="adult" /country="Israel: Mediterranean Sea" /lat_lon="31.814194 N 34.753376 E" /collection_date="2018-06-04" /collected_by="Yaron Tikochinski" gene 1..3479 /gene="NRDE2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 62 samples with support for all annotated introns" /db_xref="GeneID:102932277" misc_RNA 1..3479 /gene="NRDE2" /product="NRDE-2, necessary for RNA interference, domain containing, transcript variant X3" /db_xref="GeneID:102932277" ORIGIN
agcatgctggggcagcgagcggcgccatcttgcctcgttggggtggccggggtctccttgggaagccagaggggaggaagctgtggttcagcccatggctcttttcccggcctttgctggcgccgctgagcccggggagacgccagccagcggtagcgagggctccaggagagagttggactggcttagcaatccaagcttctccacagaagatgcactgaaactgcaccagcacactgcaaaggcttcagatcctgctcctgagagatcacaatttataagcaggagtccttcaaggtcagagctctcaggaggaagtgacaccaatgaagatctaaaaaaatcaactaagaaaaggaaagggaaaaagaaaaagcatcatcaccacaaaaaaagaaaaaagaaaaccagagaggaatcaagtaacagtgagtcagacttggacagtgagtgtatgagggataaacctagaggaagtgacacaaaccgtgaaagagaagcagcaacattgaatctagaagacgtaacatcaaatgttgccaccaatcgctttgtttggcttgaggatattcaggctttgacagcagaaaccttcagaacagacaagaaaccagaccctgcaaactgggaatacaagtcactgtatcgaggggacatagcaagatacaagcggaaaggtgactcatgccttggtattgacctaaagaaacagtgtataatttgggaaagttccatggtagaaaagaaacaatcccccaagcgacctgaacgctacttcacgaagaatagtgtgaaattattgagcacagatggaattccactttacagtaaaagccaaacttcatctggttcaagcacttttataccagtttcacaactggacagtgatgctcctactaccacaacctgtgtgaatcctcttgggatttatgatccattgaccacactctggttgcaaggaaaaggtcccccagagcatgagactttaaagcagcaggcatcccaagagaccagtgggaatgttaactctattctaatggcaaaagtggaagaatataataggatggtcagagaaaatccaagagatgttcacacttggatggaatttgtttcttttcaggatgaaataatgagaggacctagcccttatgccatcaaagagggagagcaggaaataaggagaaaatcattcaagctaatcctagaaaagaaactggccattttagagagagctattgaaagcaacccaaatgatgttgatctgaaacttgccaagctgaagctttgtacagaattctgggaaccatcaactttgatcaaagaatggcagaagctggtttttctgcatcccaataatccactgctgtggcagaaatatctcttattttgtcaaagtcagttcagcaccttttcagtttcaaaagtccatagtttatatggaaaatgtttgagcactttggcagctgtacaggatggcagcatggtatcacatcctatactgcctggcacagaggaagctatgttagctgtctttcttcagcagtgccattttcttagacaggcgggccattctgagaaagctgtgtctttgttacaagccctggttgatttcaccttctttaaacctgacagcgtaaaagatctgccaacaagaggacaggtagagttctttgaaccattttgggatagtggagagcctcggtttggagaaaaaggagcaaaaggctggaaatcatggatgcatcaacaagaaaagggaggctggattatcatcaataaacctgatgatgaggaggaggaagatgtagatgaagatcaagaaataaaggataaaactctacccaaatggcaaatttggctggacattgaatgttcccgtgaaacaaggcattggctgccttggcgacctgacaaaactaaaaagcaggccgaagaagattgtgaagacccggagagacaggtattgtttgatgatcttgggccatctttaatcagactttctagtccagatcttcagtttcagctgctgtactcatttctgcaattcttgggagttccatgtgggtgtagtctctttccttcaaatctccatatcgcgatggatgagaacaacatctttgacactgggcagtctgaaaggccactgacttcttttgactcgctgctttctggagttaatagtattggccatatggacacaatgaccagagggagacagcacataggacacagtaaggaaggagaggagttcatacagaatgtctttcatttaatattgccgttattttcaggaaaggaaaagtcaaacctttctgtctgttggctacaatatgaaatctcaaaggttggtctgtgtctccaagcaaaaaacaagaagaaactgaagtcacagggaaagaaaagcaaaaaactagccaagaatctccttaaggcatctgaaaaccgaaacaacctttccctctggaaactgtatgcctacttggaatggttacttggcaacacagaagatgctagaaaagtatttgatacagctctttgcttggcaggaactgaaggaatgagaaatacccaactctgtaatctgagcctgctttatgcttcactggaagtggagctactagagagtctggaggaaactgttatgtcacgtgctgtacatatattgaccaaactgactgaaagtgggccatatgtaccttatcctgggcaagtgttatctgtgaatatcttgaaagctcggaaggcatatgagcatgcgttgcaagattatttaaatgaaagtccaatctctaactgggatcaggtcagcagttctaaccaactggttaatttagttggttgttatgcactttttcagtatttgactgttgggattgatgctgctgtattaatatgtagacatatttctgaaaagcttaaaggttctgcttcacggaagtttgaaggtattggagaaaatcttggcattcataatttccccactgctcttgaagcagtcacactcatgcacacaaatttactcaggtaccatatgaaagttagcatttaccctttaaatccactgcgagaggcactaacggaagctttgaagctgtatcctagcaaccagtctctttggaggtcatatatccagatccaaagcaagtctcacaatgctagcaaagcacgaagattttttgatagtgtcacaaggtctactaagtccctagagccgtggctgtttgcaatccaagcagaggagatgagaaagaagcttgtcgagaatgttcagagatgttggagaaatatattcaacaattcctgaaactggattaacaaatcggatcaaagctttatttgaacacgcaattcagagtgaaaacggtgcccattgtccgttgctgtggagaatgtatttgaattttctgttttctctaggggataaagaaaggagcaaaggactgttttacaaagcccttcagaactgtccctgggcaaag
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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