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2024-04-23 20:31:14, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XR_005018580            3680 bp    RNA     linear   MAM 28-OCT-2020
DEFINITION  PREDICTED: Balaenoptera musculus NRDE-2, necessary for RNA
            interference, domain containing (NRDE2), transcript variant X2,
            misc_RNA.
ACCESSION   XR_005018580
VERSION     XR_005018580.1
DBLINK      BioProject: PRJNA607322
KEYWORDS    RefSeq.
SOURCE      Balaenoptera musculus (blue whale)
  ORGANISM  Balaenoptera musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Mysticeti; Balaenopteridae; Balaenoptera.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045786.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Balaenoptera musculus Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.5
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3680
                     /organism="Balaenoptera musculus"
                     /mol_type="transcribed RNA"
                     /isolate="JJ_BM4_2016_0621"
                     /db_xref="taxon:9771"
                     /chromosome="2"
                     /sex="male"
                     /cell_type="Fibroblast"
                     /tissue_type="Epidermis and Blubber"
                     /country="Pacific Ocean: Santa Barbara"
                     /lat_lon="34.41938 N 119.69905 W"
                     /collection_date="2016"
                     /collected_by="Jeff K. Jacobsen, Susanne Meyer, Li-Fang
                     Chu, Jessica Antosiewicz-Bourget"
     gene            1..3680
                     /gene="NRDE2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:118889594"
     misc_RNA        1..3680
                     /gene="NRDE2"
                     /product="NRDE-2, necessary for RNA interference, domain
                     containing, transcript variant X2"
                     /db_xref="GeneID:118889594"
ORIGIN      
tgaaaaggcggtgcggcctgtgatcatggcgctgttccccgcctttgcgagtgttagtgaggcgcccgagagtgggagccccaggaaagaattagactggctgagcaacccaagcttttgtgttggaaccgtaacatctctgagccaacaaactgaagaggccacagcctttgtttctgaagagtcgctactgaccaggagtcctctgaattcagagcctttagatgaaagtgacactaacagaaagcccaaacaaacaagcagaaaaaagaagaaagagaaaaagaagaaaaggaagcatcagcaccacaagaaaaccaagagaaaacgtgggcagtcaagtagcagtggatctgagtcatatactgattctgaaaaggacagatcttccagaagcatcagagacagtaaaaaggaatcagagaaaccaaatcaagaaaataatgccactgctgatattggacgtcactttgtttggcttgaggacattcaggctctgacgggagaaaccttcagaacagataagaagccggatcctgcaaactgggagtataagtctctttaccgaggagatgtagcaagatacaagaggaaaggagactcctgccttggcattaaccctaagaagcagtgtatatcttgggaggggacttccacagaaaagaagcggtcacacaagcatgtcgagcgctactttacaaagaagagtgtgggattaatgaacgttgacggagttgccattagcagtaaaactgagcctgcctcatcggagtcgatctcatttatcccagtgaagggtgcagaggacgtggttgcccctgttacaacctggttgaaccctctggggatttatgatgaagccaccacacagtggttacaaggccggggtccttcagggcaagaatccaagcagccagattcacagcccaacagagagaacgtgcttctcaaggccaaggtggaggagtttaacaggagggtatgggagaatcctcgggatgttcagctgtggatggcatttgttgcttttcaggacgaggtcatgagaagtccgggcctgtacgccattgaggaaggagagcaggaaaagcggaagcggtccctgaggctggttctggagaagaagctggccattctggagcgggccgtggaaagcaacccgagcagcgtggatctgaaactcgccaagctgcagctctgcaccgagttctgggagccctccactctggtcaaagagtggcagaaactgatatttttacatcccaacaatacagccctttggcagaaataccttttattttgccagagccagtttagcaccttttccatatcaaaaattcagagtctttatggaaaatgcttgagtactttgtctgctgttaaggacggcagcatcttgtcccaccctgagctgcctggcaccgaggaggccatgtttgccctctttcttcaacagtgccactttctgcggcaggctggtcactccgagaaggccgtctctctgttccaggccatggttgacttcaccttcttcaaacccgacagtgtgaaagacctgcctaccaaaggacaggtagaattctttgagcccttttgggacagcggagagcccagggctggggagaagggcgcccgaggctggagagcgtggatgcagcagcaggagcggggcggctgggtggtcgtcagcccggatgatgacgatgatgaaccggaagacgacgaccaggaaattaaagataagactctgcccaggtggcagatctggcttgctgctgagcggtcccgagatcacagacactggcggccgtggcgccctgagaagaccaagaagcaggcggaggaagactgtgaggacccagagagacaggtgttgtttgatgatattggacagtctctgatccgactttccagcccggatcttcagtttcagctggttgcagcctttctgcagttcttgggtgtgccttccagcttcagccctccggcctcctgcctctatctggccatggatgagaacagcatctttgacaatggactctatgatgaaaagcccttgacttttctcaacctttcattttctggcgtcagctgtgtcggacgcacggaccagctgggttgctggcactggaccaggggtcacagtcgagagggcgaggagttcatccgcagcatcttccacctcgtgatgcctttgttttcaggcaaggagaggtctcagctctgcttctcctggttacagtacgagattgcaaaggtcgtttggtgtctgcacactaaaaacaagaagaggttaaaatcacaaggaaagaactgcaaaaaactagccaagaatctccttaaggaaccagacaaccgcaacaatttttgcctctggaagcagtacgcgcatctggagtggttgctcggcaacacagaggatgccagaaaagttttcgatacagcactcggcatagcagggagcagagaactgaaggaccatgagctgtgtgagctcggtctcctctacgccgagctggaggtggagctgttgccggacgtgaggggggccgccccagcccgagccattcacgtattgaccggactgaccgagaatggggcctacgggccctacaccgggcaagtctcggccgttcacattttgaaagctcggaaggcttatgaacacgcgctgcaggactgtttgggggagagctgtgtctccgattcctttagccgcctgattagcctggttaaatgctttatgctcttccagtatttgaccctagggatcgacgctgctgtgcggatatatgagcaggtacttgcaaaacaccaggtctctgtttccgcagagggccctggtctggagggcagtgccagcccgcagagcctgagcagcgtcctcgaggccgtcaccctgacacacacgagcctgctcaggttccacacgaaagtcgccgtctacccgctggctcctctgcgagacgctctctcggaggctttaaagttgtatccgggcaaccaggttctttggaggtcatatgtacagattcagaataagtcccacagtgccagtaagaccagaagattcttcgatgcgatcaccaggtctgccaaacccttggagccgtggttgtttgcaattgaagctgagaaaatgaggaaaagactagtggaaactgtgcagagggtagacggtagagaggtccacgccaccattcccgagaccggcctgacgcatcggatcagagccctgtttgaaaatgcgatgcggagtgactacggcagccagtgccccttactgtggaggatgtatttgaattttttggtttccttaggaaataaagaaagaagcaaaggtgtgttctacaaagcacttcagaattgtccttgggcaaaggtgctgtacctggatgccgtggagtacttccccgatgagatgcaggagatcctggacctgatgacggagaaggagctccgggtgcgcctgccgctggaggagctggagcttctgcttgaggactagagaccaggaggggagtggggcctgcctccgaggcctcggcgcctgccccgtgggagccaggagacaccagaagagacgctgctgttgaacaactgccaccagctctgggggtgtgacggggcagcaggtattgaagtctgcagtccttttggtcagccagcttccctaacaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]