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2024-03-29 07:01:42, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XR_004841271            5995 bp    RNA     linear   VRT 20-AUG-2020
DEFINITION  PREDICTED: Egretta garzetta NRDE-2, necessary for RNA interference,
            domain containing (NRDE2), transcript variant X2, misc_RNA.
ACCESSION   XR_004841271
VERSION     XR_004841271.1
DBLINK      BioProject: PRJNA253831
KEYWORDS    RefSeq.
SOURCE      Egretta garzetta (little egret)
  ORGANISM  Egretta garzetta
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Pelecaniformes; Ardeidae; Egretta.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_009258767.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Egretta garzetta Annotation Release
                                           101
            Annotation Version          :: 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.5
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5995
                     /organism="Egretta garzetta"
                     /mol_type="transcribed RNA"
                     /isolate="BGI_Z169"
                     /db_xref="taxon:188379"
                     /chromosome="Unknown"
                     /sex="male"
                     /country="China"
     gene            1..5995
                     /gene="NRDE2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:104135667"
     misc_RNA        1..5995
                     /gene="NRDE2"
                     /product="NRDE-2, necessary for RNA interference, domain
                     containing, transcript variant X2"
                     /db_xref="GeneID:104135667"
ORIGIN      
ctcgagccgcggcgccatcttcccccgccgctccgcagggcacttcgggcagatagtagtggcggcaagctgagagatggccctgttcccggcatttgccggtgccgctgagcccggggggcccccaaccggcagcagcgagggctccaggaaagaattggactggcttagcaacccaagcttctctacagaagatgcactattactgcatcagcggactacagaagttgcaaatctcatccctgaaaaatcaccactaataaggactacttcaagatcagagttgtcaggggaaagtgatacagatgagagtctgaggcagtcaagtaagaagaggaaaaagaaaaagaaaaagcatcaccattataagaagacaaaaaagaaaaccagaggggactccagtagcagcgaatcagacctggacactaagcgcatcgaggacaaagccccaagaagtggcagaaatcacgaaaaggaagcagcagcaaatctagataagaaaacatcaaatcttaccagcaatcgttttgtttggcttgacgatatccaggatttgacagcagaaaccttcagaatagacaagaaaccagaccctgcaaactgggcctacaaatccctgtatcgaggagacatagcaagatataaaaggagaggagagtcgtgtcttggcatagatgtaaagaaacagtgtataacttgggacagctctgcatcaaaaaggaagcagttacagaggcaacccgagcgctacttcacaaagaacaatgtgaagatgctgaacacagatgggattcctgtttgcagtaagagttctacatctgacccaactgcttttataccggttttccaaatggaaactgatgatcattctgacacaacagaggtaaatcctcttgggatttatgatccgtcaactacagtgtggctgcaaggaaaagagtgcaagagtgcagaccatgaacctgtaaatacgcagcaaacaactcaagagcctgggataaacattaactccactctaatgacaaaagtggaagaacataacaagaaagtcagagaaaacccaagagatattaatgcctggatggagtttgtttcttttcaggatgaattaatgagaggacctagcccttatgccagtaagggagagcaggaagtaagaagaaaatcactgaagttaatcttagaaaagaaactggctattttagagagggcaattgaaagcaatccaagtaatgttgatctgaaacttgccaggctgaagctttgcacagaattctgggaaccagcagctttgatcaaagaatggcagaagctaattttcttacatcccaataatccagagctgtggaagaaatatctcctgttctgtcaaagtcagttcactaccttttctgtttcaaaaatcaatagtgtctatggaaaatgtttgactacattggcagctgtacaggatggcagcatggtatctcatcctctactgcctggcacagaagaagctatgctagctatatttattcagcagtgccactttctgagacaggctggccattctgagaaagcagtgtctttgtttcaggctctgattgacttcaccttctttaaacctgacagtgtaaaagatctgccaacaaggggacaggtggaattctttgaacccttttgggatagtggagaaccacgaattggagaaaaaggagcaagaggctggaaagcatggatgcaccaacaagaaaagggtggctggattgctcttaagactgatgatgatgatgatgaagagatagatgaagatcaagaaataaaggataaaactctccccaagtggcatatttggttggatattgaatattctcgtgaagcaaggcactggttaccttggaggccagacaaaatgaaaaaggaagctgaagaagattgtgaagatccagaaagacaggtgttatttgatgatcttggaccatctttaatccagatttctaatccagatcttcagcgtcagctcctgtactcattcttgcaattcctgggagttccatgtacaagtaaactctttccttccaacctctatattgccatggatgaaaataacatctttgacagtgtgctttctgatgaaaagccactgacttctgttgattttccgctttgtggattcaacagtattggtcatatggacacgatgctacgaggaagacatcacataggccactataaagaaggagaggagttcatacagaatgtttttcatgttctattcctgctattttcaggaaaggaaaaatctaacctgtccttttgttggttgcagtatgaaatatctaaggtagtccagtgtctccaagtgaaaaacaagaagaagctgaaagcacaagggaaaaagagtaaaaagttggccaagaatctccttaaagaacccgacaaccgaaaccacctttctctctggaaactgtatgcctacctggaatggctgcttggtaacattgatgatgccaggaaggtatttgacacagctctttgcacggcggggacaggaggattgaagagtccccagctctgcagcctcagtctgctttatgctcagctggaagtggaactgctagaaagtatagaaggagcggttatgtcacgtgctgttcacatattgaccaaattggctgaaagtggaccatatgtgccctataatggacaggtgttacctgtgaatgtcttgaaagctcgtaaaacatatgagcatgcactacaagattatttaagtaaaacatcagtttctaatcaggatcaggtcagtgatgcgaatcagctggtgaacttggttggctgttacgcgctcttccagtatttgactgttgggattgatgctgcagtattaatatacgcacagacttcagaaaaacttgaagctgctggtccacagacatgtgaaaatactggagagaatgttggcattcagaattttcccactgctcttgaagctgtcacactgctgcatacaaatttactcagattccacatgaaaattagtgtttatcctttgaatcctctgcgagaggcactaacggaggctctgaaacggtatcctagcaacctgcctctttggaggtcatacatccacatccaaaggaagtctcactgtgctagcaaagcacgaagattttttgatggtgtcacaaggtctactaacgctttagagccatggctgtttgcaatccaagcagagcagatgagaaaaaaactcactgagaatgtccagagggcagatgttggtgaaatacattctaccattcctgaaactgggttaacaaatcggattgtagctctgtttgaacacgcagttcagagtgaaagtggtacccattgtccactgctgtggagaatgtatttgaactttctggcttcattaggaaaaaaagaaaaaagtaaaggattgttttataaagcccttcaaaactgtccttgggcaaaggtactctatatggatgcagtagagtacttccccgatcaactgcaagagacaattgatctaatgactgaaaaagaattgagagtgcgggtacctctggaagagctggatctgctattggaggtttaaaagatgactgtagatgagtggagaaggtgcaggagttagttccaaaactaacatttagacctgtctcttctcaaacaggaactctgctgggacttgggtactatggactacttttttttttttttttttaaagttgtttttgttttgtttttttaagcttttatataaattgctatcaaaatggagttccagtagctgcaagtactctggaatcaagtactgctttttgcccacaaaaatgcatccgtttctctgaagcattgctggctcccacagaaggataccctcttataaatagcctcctgttgaacgctgcccacatttcttattctattgtttgaaatcacattccctagagttcagcagagatccagtacatgccaactatggtttggtgggcagcacaggaaataaacatctgccagaatggatgctccactgtcctccagttggcagacttcagtgatttccttcagctggaggtttttcaggagaaaactatcactaacagcactgaaaggatcggggtcatcagcaggtgagggccgattgcacagaaaactctgcctggacaaagccatacaacctatggttcggttttgcctgtagcaccacaatacaaggtataatatgttgtagttcaggctgcacttcatttattcctttctaaaaggaaatactacggggaatatgcagaattttaaatgacattacagcacttcttaagagccttataatattgctatggttgcaggtgatgctggttttgctgtaaaagtaattgatttgtctttgtaaaaaatactcattttatttttaaaatccatgctgctttctgaaatggcggagctcctgaactgggggtaggagttaactctgtgcaccgaacagtaacattgcaaatggtgtgcacatgcgtgtgtttttgctctcctgtcagagcaaaatccatttcctctaaagccgtggaagggaggcggagagggggaagcctgatggtgctcctgtgtgtgtctctcttcagagtcatagaatcacggcacagccccagcagggagggacccccagagatcatctgctccagccttttgtggggcagggagcctaagtgggattatccagcaacctgtccagtctcctcttgaaaacctcccccgagggcagcaatggctcttgttcagtcaccttgctcttccctgcatcccctccccaggccctttcctttgcacagctcctccctttgctcagggcagtcggaggctgctcgcttgctggagctcctggcctaaatctggcctggtaatttggaccccagtagctttttctgcccttagagggaatatactcgctgttctctctctcctggtctttacctttgtcttgatctctgtgactcaagttcaggaagcagggagaaaggggcagaagttaaattctgctgcaaaaggttaagaatttaattttgaagtacgtttctttttcagttcctgttgtggcagccagggtaccagcaggcagctcgtggtttagctcagcacattgcagcttcccttcaggcagctgaaccgacctcgtggtggttggtgcttctaagccagcgttaacagccatgtcccagatgaaaaaagccctgttcgccacacatgtcataaagctcttcagcccctcgagcgatgatgagatcaactgccatgatgaggaagtgctaaaaaatcactggctttttgtgacctttccaaggagacagatctcataaggtttgtaagaatgggtaataaaacttgacttgttgtttttctatctccagctgaaaaacaactctattttggggttcctgtcatccagattaaataaaaagactccattcatctgtagggtttgtttttaacaatgaaccacataatttttacatagaaaaacaacatctcttggccttgctgctaccattgttgttacagccctggcagttaccaaagggattgctctgtgttcaactcccaaatgtctgttatgggccagcatttgctcccacagaaagtttccagagcaaagactgcacgttgcttaactgtggtctgtatatggaactctaacaaatcttaaaaagcatacacacatttggtaattaattaattactcagaccttaacaagtgcttcacagaagtacactacagagtacagtatagacattgctacagcttagcaaagtagaaatgaaacccccttgggggtggaggtgcaggcagtaggtttgtttcacagaagggcaagggttggaggtcatctagtccaaccctcctgctaaagctggttcaccgagagcaggttgcaaaggtcatcatccaggcagcttttgaatatctccagagaaggagatgccacaacctccctggacagcctgtgcc
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]