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Previous release (v1)
2025-11-16 09:03:15, GGRNA.v2 : RefSeq release 232 (Sep, 2025)
LOCUS XR_004751278 3630 bp RNA linear VRT 05-JUL-2020
DEFINITION PREDICTED: Oxyura jamaicensis NRDE-2, necessary for RNA
interference, domain containing (NRDE2), transcript variant X3,
misc_RNA.
ACCESSION XR_004751278
VERSION XR_004751278.1
DBLINK BioProject: PRJNA641662
KEYWORDS RefSeq.
SOURCE Oxyura jamaicensis (ruddy duck)
ORGANISM Oxyura jamaicensis
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes;
Anatidae; Anatinae; Oxyura.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_048897.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Oxyura jamaicensis Annotation
Release 100
Annotation Version :: 100
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.4
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..3630
/organism="Oxyura jamaicensis"
/mol_type="transcribed RNA"
/isolate="SHBP4307"
/db_xref="taxon:8884"
/chromosome="5"
/sex="female"
/tissue_type="blood"
/dev_stage="adult"
/geo_loc_name="USA: Scotland Neck, NC"
/breed="ruddy duck"
gene 1..3630
/gene="NRDE2"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 100% coverage of the annotated
genomic feature by RNAseq alignments, including 41 samples
with support for all annotated introns"
/db_xref="GeneID:118167874"
misc_RNA 1..3630
/gene="NRDE2"
/product="NRDE-2, necessary for RNA interference, domain
containing, transcript variant X3"
/db_xref="GeneID:118167874"
ORIGIN
gagggaaaatgggatgacgaggaaggaaaagctgcctctggctatggaaactccatcctcggctcctccccgcgggctgaacagtaatcccctccttcagtcccatcagcggaggcccggagaatgcgcgacgcccccaccacagacactttccgcgcccagcacccacgccggtccggccgccattttgggagccaaggcagacgaactacatctcccagcaggcccggcgccgcggcgccatcttgccccttcgctccgcggggcagttcgggcagccagcgcgggcggtgagcggggctatggcgctgttcccggcctttgccggtgccgcggagcctggggagacctcagccggcagcagcgaaggctccagaaaagacctggactggctgagtaacccaagcttctctacagaagatgcactgttagtgcatcaacgcacaacagaaattgcaaattctacccctggaaaatcaccactaataagcaggacttcttcaagatcagagctgtcaggggaaagtgattcagatgagaatctgaaaaagtcaagtaagaaaaggaaaaagaaaaagaaaaagcatcaccactataagacaaaaaagaaagccaaaggggactccagtagcagcgaaccagacttggacactaagcacgtcaaggacaaagcgacagcaagtggcagaaatcgcgaaaaggaagcagcagcaaatctaggtgataaaacatcaaatcttaccaacaaccgctttgtttggcttgatgatatccaggctttcacagcagaaaccttcagaatagacaagaaatcagatcctgcaaactgggcctacaaatccctgtatcgaggggacattgcaagatataaaaggaaaggagagtcctgtcttggcatagatgcaaagaaacaatgtataacttgggacagtcctgcatcccaaaagaagcaatcacagaggcgacctgagcgctacttttcaaagaacaatgtgaagacgttaaacacagatgggattcctgtttgcagtaaaagttctccatctgactcagctgcttttataccagttttccaagtggaaagcagtgatccttctgacacaacagaggtaaaccctcttgggatttatgatccatcaactacagtgtggctacaaggaaaaggatacaaaggttcagaacatgagcctgaaaatacccagcaggcatttcaggagtctgggataaatgttaaccccattctaatgacaaaagtggaagaatataacaagaaagtcagagaaaacccaagagatattaatgcttggatggaatttgtttcttttcaggatgaattaatgagaggacctagcccctatgcaagtatgggagagcaggaagtaagaagaaaatccctgaagttaatcttagaaaagaaactagctattttagagagggcaattgaaagcaatccaagtaatgttgacctgaaacttgccaggttgaaggtttgcacagaattctgggaaccgccagctttgatcaaagaatggcagaagctaattttcatacatcccaataacccagagctgtggaagaaatatcttctgttctgtcaaagtcagttcagtaccttttctgtttcaaaaatcaatgggctctacggaaaatgcttgactacactggcagctgtacaggatggcagcatggtatcacatcctccactgccaggcacagaagaagctatgctagctatatttattcagcaatgccactttctgaggcaggctggccattctgagaaagcggtgtctttgtttcaggctctgattgacttcaccttctttaaacctgacagtgtaaaagatctgccaacaaagggacaggtggagttctttgagcctttttgggatagtggagaaccacgaattggagaaaaaggagcaagaggctggagggcatggatgcaccaacaagaaaagggtggctggattgctgttgacaaacctgatgatgatgatgaagaagagatagatgaagatgaagaaataaaggataaaactcttcccaagtggcacatttggctggatattgaatattctcgtgaagcaagacattggttaccttggaggccagacaaaaccaaaaagcaaactgaagaagactgtgaagatccagaaagacaggtgttatttgatgatctcggaccatccatgatccagctttctaatccagaccttcaacatcaactactgtactcatttttgcaattcctaggagtgccatgtataagtaagctctttcctcccaacctctatattgccatggatgaaaataacatctttgacaatgtactttccgatgaaaagccactgacttctattgatgtgccactgtctggattcaacactattggtcacatggacacgatgctaagaggcagacagcatatcggccactataaagatggagaggagttcatacagaatgtttttcatgctctatacctgctgttttcaggaaaggaaaaatctaacctgtccatttgttggttacagtatgaaatatctaaggtagttcagtgtctccaaacaaaaaacaagaagaagctgaaagcacaagggaggaaaagtaaaaaattggccaagaatctccttaaagcacctgacaaccgaaatgacctttctctctggaaactgtatgcctacctagaatggctgcttggcaacatcgatgatgctaggaaggtatttgacacagctctgagcacagcagagacaggaggattgaagagtcccaagctgtgcagcctcagtctgctttatgctcagctggaagtggaactactggaaagcctggaaggagctgtcacatcacgcgctgttcatatattgactaaattgactgaaagtggaccatatgtgccctataaaggacaagtgttatctgttaatgtcttgaaagctcgtaagacttatgagcatgcagtgcaagattatttaagtaaaacaccggtttctgatcgggatcaggttggtgagtctaaccagctggttaacttggttggttgttatgcagtgttccagtacttgactgttgggattgatgctgcggtattaatatatacacaggcttcggaaaagcttcaggttcctgctccagagaaatgtgaaaataccggagcaaattctggcattcaaaatcttcccagtgctcttgaagctgtcacactgctgcacacaaatttactcaggttccacgtgaaaattagcgtttatcctttgaatcctttgcgagaggccctaacggaggcactgaggcgatatcctagcaaccagtccctctggaggtcgtacgtccacgtccaaaggaagtctcacagtgctagcaaagcacgaaggttttttgacggtgtcacaaggtctaccagctctttagagccgtggctgtttgcaatccaagcagagcagatgagaaaaaaacttactgagcatgtccagagatgttggtgaaatatattccactattcctgaaactgggttaacaaataggattattgctctatttgaacatgcaattcagagtgaaaatggtacccattgtccgctgctgtggaggatgtatttgaactttctggtttcagtaggaaaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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