2024-03-29 01:43:21, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XR_004751278 3630 bp RNA linear VRT 05-JUL-2020 DEFINITION PREDICTED: Oxyura jamaicensis NRDE-2, necessary for RNA interference, domain containing (NRDE2), transcript variant X3, misc_RNA. ACCESSION XR_004751278 VERSION XR_004751278.1 DBLINK BioProject: PRJNA641662 KEYWORDS RefSeq. SOURCE Oxyura jamaicensis (ruddy duck) ORGANISM Oxyura jamaicensis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anatinae; Oxyura. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048897.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Oxyura jamaicensis Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3630 /organism="Oxyura jamaicensis" /mol_type="transcribed RNA" /isolate="SHBP4307" /db_xref="taxon:8884" /chromosome="5" /sex="female" /tissue_type="blood" /dev_stage="adult" /country="USA: Scotland Neck, NC" /breed="ruddy duck" gene 1..3630 /gene="NRDE2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 41 samples with support for all annotated introns" /db_xref="GeneID:118167874" misc_RNA 1..3630 /gene="NRDE2" /product="NRDE-2, necessary for RNA interference, domain containing, transcript variant X3" /db_xref="GeneID:118167874" ORIGIN
gagggaaaatgggatgacgaggaaggaaaagctgcctctggctatggaaactccatcctcggctcctccccgcgggctgaacagtaatcccctccttcagtcccatcagcggaggcccggagaatgcgcgacgcccccaccacagacactttccgcgcccagcacccacgccggtccggccgccattttgggagccaaggcagacgaactacatctcccagcaggcccggcgccgcggcgccatcttgccccttcgctccgcggggcagttcgggcagccagcgcgggcggtgagcggggctatggcgctgttcccggcctttgccggtgccgcggagcctggggagacctcagccggcagcagcgaaggctccagaaaagacctggactggctgagtaacccaagcttctctacagaagatgcactgttagtgcatcaacgcacaacagaaattgcaaattctacccctggaaaatcaccactaataagcaggacttcttcaagatcagagctgtcaggggaaagtgattcagatgagaatctgaaaaagtcaagtaagaaaaggaaaaagaaaaagaaaaagcatcaccactataagacaaaaaagaaagccaaaggggactccagtagcagcgaaccagacttggacactaagcacgtcaaggacaaagcgacagcaagtggcagaaatcgcgaaaaggaagcagcagcaaatctaggtgataaaacatcaaatcttaccaacaaccgctttgtttggcttgatgatatccaggctttcacagcagaaaccttcagaatagacaagaaatcagatcctgcaaactgggcctacaaatccctgtatcgaggggacattgcaagatataaaaggaaaggagagtcctgtcttggcatagatgcaaagaaacaatgtataacttgggacagtcctgcatcccaaaagaagcaatcacagaggcgacctgagcgctacttttcaaagaacaatgtgaagacgttaaacacagatgggattcctgtttgcagtaaaagttctccatctgactcagctgcttttataccagttttccaagtggaaagcagtgatccttctgacacaacagaggtaaaccctcttgggatttatgatccatcaactacagtgtggctacaaggaaaaggatacaaaggttcagaacatgagcctgaaaatacccagcaggcatttcaggagtctgggataaatgttaaccccattctaatgacaaaagtggaagaatataacaagaaagtcagagaaaacccaagagatattaatgcttggatggaatttgtttcttttcaggatgaattaatgagaggacctagcccctatgcaagtatgggagagcaggaagtaagaagaaaatccctgaagttaatcttagaaaagaaactagctattttagagagggcaattgaaagcaatccaagtaatgttgacctgaaacttgccaggttgaaggtttgcacagaattctgggaaccgccagctttgatcaaagaatggcagaagctaattttcatacatcccaataacccagagctgtggaagaaatatcttctgttctgtcaaagtcagttcagtaccttttctgtttcaaaaatcaatgggctctacggaaaatgcttgactacactggcagctgtacaggatggcagcatggtatcacatcctccactgccaggcacagaagaagctatgctagctatatttattcagcaatgccactttctgaggcaggctggccattctgagaaagcggtgtctttgtttcaggctctgattgacttcaccttctttaaacctgacagtgtaaaagatctgccaacaaagggacaggtggagttctttgagcctttttgggatagtggagaaccacgaattggagaaaaaggagcaagaggctggagggcatggatgcaccaacaagaaaagggtggctggattgctgttgacaaacctgatgatgatgatgaagaagagatagatgaagatgaagaaataaaggataaaactcttcccaagtggcacatttggctggatattgaatattctcgtgaagcaagacattggttaccttggaggccagacaaaaccaaaaagcaaactgaagaagactgtgaagatccagaaagacaggtgttatttgatgatctcggaccatccatgatccagctttctaatccagaccttcaacatcaactactgtactcatttttgcaattcctaggagtgccatgtataagtaagctctttcctcccaacctctatattgccatggatgaaaataacatctttgacaatgtactttccgatgaaaagccactgacttctattgatgtgccactgtctggattcaacactattggtcacatggacacgatgctaagaggcagacagcatatcggccactataaagatggagaggagttcatacagaatgtttttcatgctctatacctgctgttttcaggaaaggaaaaatctaacctgtccatttgttggttacagtatgaaatatctaaggtagttcagtgtctccaaacaaaaaacaagaagaagctgaaagcacaagggaggaaaagtaaaaaattggccaagaatctccttaaagcacctgacaaccgaaatgacctttctctctggaaactgtatgcctacctagaatggctgcttggcaacatcgatgatgctaggaaggtatttgacacagctctgagcacagcagagacaggaggattgaagagtcccaagctgtgcagcctcagtctgctttatgctcagctggaagtggaactactggaaagcctggaaggagctgtcacatcacgcgctgttcatatattgactaaattgactgaaagtggaccatatgtgccctataaaggacaagtgttatctgttaatgtcttgaaagctcgtaagacttatgagcatgcagtgcaagattatttaagtaaaacaccggtttctgatcgggatcaggttggtgagtctaaccagctggttaacttggttggttgttatgcagtgttccagtacttgactgttgggattgatgctgcggtattaatatatacacaggcttcggaaaagcttcaggttcctgctccagagaaatgtgaaaataccggagcaaattctggcattcaaaatcttcccagtgctcttgaagctgtcacactgctgcacacaaatttactcaggttccacgtgaaaattagcgtttatcctttgaatcctttgcgagaggccctaacggaggcactgaggcgatatcctagcaaccagtccctctggaggtcgtacgtccacgtccaaaggaagtctcacagtgctagcaaagcacgaaggttttttgacggtgtcacaaggtctaccagctctttagagccgtggctgtttgcaatccaagcagagcagatgagaaaaaaacttactgagcatgtccagagatgttggtgaaatatattccactattcctgaaactgggttaacaaataggattattgctctatttgaacatgcaattcagagtgaaaatggtacccattgtccgctgctgtggaggatgtatttgaactttctggtttcagtaggaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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