ver.2
Home
|
Help
|
Advanced search
Previous release (v1)
2025-12-15 20:56:35, GGRNA.v2 : RefSeq release 232 (Sep, 2025)
LOCUS XR_004286082 4438 bp RNA linear MAM 03-FEB-2020
DEFINITION PREDICTED: Mustela erminea NRDE-2, necessary for RNA interference,
domain containing (NRDE2), transcript variant X2, misc_RNA.
ACCESSION XR_004286082
VERSION XR_004286082.1
DBLINK BioProject: PRJNA602914
KEYWORDS RefSeq.
SOURCE Mustela erminea (ermine)
ORGANISM Mustela erminea
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia;
Musteloidea; Mustelidae; Mustelinae; Mustela.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_045618.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Mustela erminea Annotation Release
100
Annotation Version :: 100
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.3
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..4438
/organism="Mustela erminea"
/mol_type="transcribed RNA"
/isolate="mMusErm1"
/db_xref="taxon:36723"
/chromosome="5"
/sex="male"
/tissue_type="spleen (genome), liver, muscle, kidney"
/dev_stage="adult"
/geo_loc_name="New Zealand: Coromandel"
/lat_lon="37.304717 S 175.755071 E"
/collected_by="Andrew Veale, Tim Cruickshank"
gene 1..4438
/gene="NRDE2"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 8 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 25 samples with support for all annotated
introns"
/db_xref="GeneID:116591631"
misc_RNA 1..4438
/gene="NRDE2"
/product="NRDE-2, necessary for RNA interference, domain
containing, transcript variant X2"
/db_xref="GeneID:116591631"
ORIGIN
accgcgagcgcgaaggcctcactgtcggcgagcgctctccggcgccatttctgtagaggggaacggcagcgcggcctgtaatcatggcgctgttcccggcctttgcgggcattggtgaggctcccaatagcggcagcgccaggaaagaattagattggctgagcaacccgagcttttgtgctggagccgtaacctctctgagccaacagcctgaggaggccaccgccctggtttctgaagggtcatcgccgacgaggagtcctctgaaatcagagacttcagatgaaagtgacgctaacagaaagcccagacaaacaaccaggaaaaagaagaaagagaagaagaagaagaggaagcatcaccacaagaaaaccaagagaaaacgtgggcaggctagtagcagtggctccgagccggatagtgagcctgaaaaggacaaaacttccagaagcactggagacagtagaagggaatccgagaagccaaggcaagaaagtcatgctgctgctgatgttgggcatcgctttgtttggcttgaggacgtgcaggctctgacaggagaaaccttcagaacagacaagaaaccggatccggccaactgggagtataagtctctctaccgaggagacatagcaagatacaagaggaaaggagactcctgccttggcattaaccctaagaagcagtgtatatcctgggagggggcttccacagaaaagaagcattcgcacaagcacattgagcgctattttacgaagaagagcgtgggattgatgaacattgacggagttgccgtgggcagcaaaaccgaacctccgtcatctgagccgctctcctttatccccgtgaagggcccagatgatgcgcttcctcctgttacaacctggttgaaccctctgggcatttacgatcagtccaccacgcagtggttacaaggacagggtccttcagagcaagaatcaaagcagccagactcagagacggatagagagagcgcgctgctcaaggccaaggtggaggagttcaaccggagagtgcgcgagagtcctcgcgacgtgcagctgtggatggcctttgttgcttttcaggatgaggtcatgaaaagccctggcctgtacgccctcgaggagggagagccggagaagcggaagaggtctcggaagctggtgctggaccggaagctggccatcctggagcgggccatcgagagcaaccagagctccgtggagctgcagctggccaagctggagctgtgcgctgagttctgggagccctccgcgctgctcagggagtggcagaagctgatattcgtgcaccccaacaagacggccctgtggcagaagtaccttttattttgccaaagccagttcagcaccttcactgtcgccaagatccacggtctctatggcaagtgcttgagcacgctgtccgcggtgctggacggcagcatcctgtcgcaccctgcgctgccgggcaccgaggaggcggtgtttgctctctttcttcagcactgccacttcctgcggcaggctggccactcggagaaggccgtcgctctgttccaggccatggtggacttcaccttcttcaaacctgacagcgtgaaagacctgcctaccaaaggacaggtggagttctttgagcccttctgggacagtggggagccccgggctggggagaagggcgcccgcggctggagagcgtggatgcagcagcaggagcgaggtggctgggtggtcatcagtccagatgatgacgatgatgagccagaagacgaggaccaggaaatacgagataagagtctgcccaggtggcagatctggcttgccgctgagcggtcccgagaccagaggcactggcggccgtggcgccctgataagaccaggaagcaaaccgaggaagactgtgaagaccccgagagacaggtgctgttcgatgacatcgcacagtctctgatccagctctccagaccggatcttcagttccagctggtcacagcctttctgcagttcctgggtgtgccttgtggcttcagcaccccggcctcctgcgtctacttggccatggatgagaacagcatcttcgataacgggcttcatgatgaaaagccattgactttcctcaacctctccttcaatggcatcagctgtgttggccgctcagaccccctgggctgccgtcgctggacccgaggtcacagtcgagagggcgaggagttcatccgcaatgtctttcaccttgtgatgcctctgttttcaggccaggagaggtcccagctctgcttctcctggctacggtacgagatggcgaaggtcatttggtatctgcacactaaaaacaagaagaggttaaagtcacaaggaaagaactgcaaaaaactcgccaaaaatctccttaaggagccagaaaaccgcaacgatttctgcctctggaagcagtatgcacatctggagtggttgctcggcaacgcggaggacgccaggaaggtgtttgacgcggcgctcagcctggcgggcggcggggaaccgagggggtccgagctctgggagctcggcctcctctacgcgcagctggagctggagctggagctctcggccgaagtgagggggaccactgcggcccgggccgtgcacgtactgaccagactgacggagaatgggccctatgggccctactcggggccggtctcggccgttcatgtcctgaaagcccggaaggcttacgagcacgcgctgcaggactgcctggggcagagctgcggctccgctccagctcccgccagcccggctcaccgcctcgcgagcctggccaagtgcttcctgctcttccagtatgtgactgtaggcatcgaggcggccgtgcggctctacgagcaggtgtgtgcggggctgcggggctcggtgtgcccgggcggcgtactcgaggctgtcacgctgctgcacacgggcttgctccggttccacaccagggtccacgtttaccccctggctcccctgcgccaggcgctctcagaggcgatacagctatacccagacaaccagcttctctggagggcctacatacaggttcagagcaagtcccacgcagccagtaagaccagaaggttctttgatgctgttaccaggtccgccaaagccttggagccttggttgttcgcgattgaagctgagaaaatgaggaagaggctggtggagaccgttcagagggtggatggcagagagatccatgccacgattcccgagaccggcttggctcatcggatcagagccctgtttgaaagcacgttgcagagtgaccatggccgcctgtgccctttgctgtggagaatgtatttgaactttttggtttccttgggaaacaaagaaaggagcaaaggcgtgttctacaaagcacttcagaattgtccttgggcaaaggcgctgtacctggatgccgtggagcacttccccgaagagatgcaggaggtcctggacctgatgacggagaaggagctccgggtgcgcctgcccctggaggagctggcgcttctgctggaggactagagaccaggagggaatgggccctgccttccaggccttgtcgcctgccccgccagagctgggatgctcgagattggggatgcctggaaaaaacagtgttgtggaacagaaatttgggctagaaagagctggaaaagaaggatgacaagtcagagcccctgaggaaggtggctggccagccagccaagtggacacttaccttgccgggcttggacacatgtgcttggacacagacctgctctgaaaggagagaagggcaagacagacagggaaggggaagctttggtacggttttgagcatcctggagagagatgaggtttcggaacctgagaacaagggatgacctgggtggcgagcggcagacgtcagcctgggcctgtggagattcctagtaggaacactacggctgctttcctgcctgagtgctgagaaacccgcaggctccacagaccttccaatacggaaagatgtttccttccaaagccacaggcacactcttccactgcagagaccactggctctgtgtcacgccctcccattagctgctgtccagctctgccaccggctctgggcatgtgaggcagggccagaggtgctgaaagcccccctactgcccaggtccccctgcttattgctgctgagcgccgggtgtggaggttccggaaacgagtgtgagaaggagcacgctttattggaggcagagcactgcatgggaccaacaggagaaggcggcctggggggcatcctacacgctcaaaaaagtacacaaggaggttctgctagtaagaaagatcaactggaacatgggttcctctgggcaacttccccaacttcttcccttcaaggggtcagaacaaccccgaccacttccttgaaggcagctgtggtctgctagaga
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]