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Previous release (v1)
2025-10-30 12:37:49, GGRNA.v2 : RefSeq release 232 (Sep, 2025)
LOCUS XR_003969661 8564 bp RNA linear MAM 09-SEP-2020
DEFINITION PREDICTED: Lynx canadensis NRDE-2, necessary for RNA interference,
domain containing (NRDE2), transcript variant X2, misc_RNA.
ACCESSION XR_003969661
VERSION XR_003969661.2
DBLINK BioProject: PRJNA558991
KEYWORDS RefSeq.
SOURCE Lynx canadensis (Canada lynx)
ORGANISM Lynx canadensis
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae;
Felinae; Lynx.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_044308.2) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On Feb 27, 2020 this sequence version replaced XR_003969661.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Lynx canadensis Annotation Release
102
Annotation Version :: 102
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.5
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..8564
/organism="Lynx canadensis"
/mol_type="transcribed RNA"
/isolate="LIC74"
/db_xref="taxon:61383"
/chromosome="B3"
/sex="male"
/tissue_type="muscle, distal limb"
/geo_loc_name="USA: Aroostook County, Maine"
/lat_lon="42.2466 N 71.6746 W"
/collection_date="2017-12-05"
/collected_by="Tanya Lama"
gene 1..8564
/gene="NRDE2"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 2 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 47 samples with support for all annotated
introns"
/db_xref="GeneID:115516777"
misc_RNA 1..8564
/gene="NRDE2"
/product="NRDE-2, necessary for RNA interference, domain
containing, transcript variant X2"
/db_xref="GeneID:115516777"
ORIGIN
gtgggaaaaaccacacttcccagagtgcaccgcaaccgcgaaggcctcactaccggcgtccgctcgccggcgccatttctggagagggggacggcggtgcggcctgccgtcatggcgctgttcccggcctttgcaggcattggtgaggcttccggtagcggcagcgccaggaaagaattagactggctgagcaacccaagcttttgtgctggagccataacctctctgagccaacaaactgaaggggccacagccctggtttctgaagggtcacctctgacaaggagccctctgaaatcagagccttcggatgaaagtgacactaacaaaaagcccaaacaaacaagcagaaaaaagaagaaagagaaaaagaagaaaaggaagcatcaccacaagaaaaccaggagaaaacatgggcggtccagtagcagtgggtctgagccagatagtgattctgaaaaggataaagcttccagaagcattagagacagtaaaaaggaatccgagaaaccaaaccgagaagggaacgccgtcgctgatactgggcaccgctgcgtctggcttgaggacgttcaggctctcacaggggaaaccttcagaacagataagaaaccggatcctgcaaactgggagtataagtctctctaccgaggagatatagcaagatacaagaggaaaggagactcctgccttggcattaaccccaagaagcagtgcatatcctgggagggggctgccacagaaaagaagcactcacacaagcatgtcgagcgctatttcacgaagaagagcgtgggactgatgaacattgacggagtcgccgttggcggtaaaaccgaacctccctcatctgagccggtctcatttatcccagtgaagggctcggatgatgtggttcctcctgttacgacctggttgaaccctctggggatttacgatcagtccaccacgcagtggttacaaggacagggtccttcagagcaagaatcaaagcagccagactcacagacagacagagagcatgccctgctcaaggccaaagtggaggagtttaacaggagagttcgggagaatccccgggatattcagctgtggatggcatttgttgcttttcaggacgaggtcatgaagagccctggcctgtatgccatcgaggaaggagagcaggaaaagcggaagcggtctctgaggctcgttctggagaagaagctggccatcctggagcgggccatcgaaagcaaccagagcagcgtggacctgaaactcgccaagctgaagctctgctccgagttctgggagccctccgccctggccaaagagtggcagaaactgatctttctgcatcccaacgatacagccctgtggcagaaataccttttattttgccagagccagtttagcacctttacggtgtcaaaaattcacggtctgtacggcaagtgcttgagcaccttgtctgctgtgaaggacggcagcatcttatcgcaccccgccctgccgggcaccgaggacgccatgtttgctctctttcttcagcaatgccacttcctgcggcaggctggtcactctgagaaggcggtctctctgttccaggccatggtcgacttcaccttcttcaaacccgacagtgtgaaagacctgcccaccaaaggacaggtggaattctttgagcccttctgggacagtggggagccccgggttggcgagaagggcgcccgaggctggagagcgtggatgcaccagcaggagcggggcggctgggtggtcatcagtccagatgatgatgacgatgagccagaagatgaggaccaggaaataagagagaagagtctgcccaggtggcagatctggcttgccaccgagcggtcccgagaccagaggcactggcggccgtggcgccctgataagaccaagaagcaaaccgaggaagactgtgaggatccagagagacaggtgctgtttgatgacattgcccagtctatgatccgtctttccagccaggatcttcagtttcagctggttgcggcctttctgcagttcctgggcgtgccttctggcctcagccctccagcctcctgcctctacctggccatggatgagaacagcatcttcgatgacgggcttcatgacgaaatgccactgactttcctcaacctttccttttccggtgtcagctgtgttggctgctcagacccactgggccgccggcgctggacccggggtcacaatcgagagggcgaggagttcatccgcaacatctttcaccttgtgatgcctttgttttcaggccgggagaggtctcagctctgcttctcttggttacggtacgagatcgagaaggtcatttggtgtctgcacactaaaaacaagaagaggctaaagtcacagggaaagaactgcaagaaactagccaaaaatctcctgaaggagccagaaaaccgcaacaatttttgcctctggaagcagtacgcacatctggagtggctgctcggcaacaccgaggacgccaggaaggtgttcgatgcggcgctcagcatggcggggggcagagacctgagggaccgtgagctgtgtgagctcggcctcctctacgccgggctggaggcggagctgttgccggacccgagaggggccgccgcggcgcgagccgttcacgtactgaccaggctgacggagcaggggccctgcgggccctactccgggcaggcgctggccgttcacatcttgaaagctcggaaggcgtacgaacacgcgctgcaggactgtttgggcgacggctgtgtgtccgctccggctcccagcgactccttcgaccgcctgactagcctggtgaaatgcttcatgctctttcagtacttgaccgtagggatcgacgcggccgtgcgggtgtacgagcaggtgctcgcaaaactgaagggctctgttcccccagggggctctggcccggaggacggtgcccgcgcccagggcccccacggcgcgctggaggccgtgacgctgatgcacacgagcctgctcaggttccacacgaaagtcagcctttaccccctggctcctctgcgacaggctctctccgaggcgttaaggttgtacccaggcaaccaggtgctttggcgggcatacgtgcagattcagagcaggtcccacacagccagtgagaccagaagatttttcgacgcggtcaccaggtctaccaaactcttggagccttggttgtttgcgatcgaggccgagaaaatgaggaagagactggtggaaagtgttcacagggtagatggtagagaggtccacgccacaattcccgagaccggcttgacacatcgcatcagagccctgtttgaaaatgcgttgcggagcgacaacggcagccagtgccccttactgtggaggatgtacctgaattttttggtttccttaggaaacaaagaaaggagcaaaggcgtgttctacaaagcacttcagaattgtccctgggcgaaggtgctgtacctggacgccgtggagcacttccccgaagagatgcaagaggtcctggacctgatgacggagaaggagctccgggtgcgcctgcccgtcgaggagctggcgcttctgctggaggactagaccaggagggaacgggccctgccttccgggcctctcgcctgccccgcccccgaccccccccaccggagccgggatgcgcaggacggggatgcgtgtgtgtgagcatgtgtcacgagacctccacttttcaagtttcttaattcttagtaatttgggtctgggttatcagtcttttacctcttgcacattgtttggatgtgtgaaggacacaaaaccattgtttacatattgtatatgtgaatgtgtgtacgtagggaataatcctgccaagtgaaaactaaacccgtcgtggctggtgtgcgggaggtctgttccactcctctgcctggccgtgaacgttccccactggcacccttggtggtcctgccgtcgtggtaggaaaggtctggtttctgagcactcggacctctccccgcagctggtgaggagagcagcttttgcccttaagagccgtttaaaacttggtgttctggcctcgctcccattttaaaagtttctcattatttgctaggctcttgatgccacctcccttctgtggaccaggagcatcacctgggggcttgttagagatgcagcctctgggcccacctcagcccttctgagtcagggcctgcacttgaacaggaccccctggggactcaggtgcaccaagtgtggggggcactgcccaaaggacccctgcggcaggggagtgtgcaggcggccatctgagaagtgcagagtggagccagcgccttcccaccaaacccacccctgcctgggggctgtgacacagaggcccagacccagacctgccaggccacattcttgttttgatttctgagggtatgaatggaacgaaacgtaaatatccacattcagaccactttcttccgaaaaggacacgccttgcagtcattattcaggacactgaactgggaggaaattgctctatcttccctgaggtcctgctctaagagaaacgcggacagctgctgcctctatcctgatctctagaagggctgaagttgtatttctttggcatctcatccagagaagcccgtgtcgtggaagagaatcttgcctagaaaccagcggacactggtgggggagaagggcggtgggtcagggcacccgaggaaggtggctggccagccaagtggacgcttgcctcgatctgccccgcttccttcgcggcttcaagactgaactgttcaagagaggggagaagtgccggaaatggatgaagaaagggagccacgttcccgggccacagatgccgttacacctggaaacttcgcggcaacagaacacacgtccagttcacctacctacactgaggagagagcttgcgttctggctaaatggaaatctccccatttactgcatttattgtctcgcaacacttgccaaaagtaaaacaacccacacaacatgatgtgataaaaccacaatctcagcactaagtttctatctggttgtgaccctcaggatatttcaaatggttcagcaaaaaagaaagtgaacagaatgataaagcaaagaggtaaaacggtaacacttggtgaactgaggtgatgggtatgtgggcatttactattgttgcaacttttctgaagacttcaaatttcccaaaatacaaagttggtgcaaaatttaaaaactctctttaaattgaagttaccgacaaagacactaacctagttctacagatgccaacgatacgcagttcagtgcaggcaccggcgtgaaaaggccccacacacgccgtccctacctgaccatggcacttacccctacctgaaacccaggtcctcacatacaaagcaggctggccccacactcagtgctgccgagcctcgccctaattctggtcatcagggaagaaacgtcctcacgcgcacacacaaccaagaggtacagtccagcccaggttctcaccttgatgtcggccccagagaggtcatctttagccatgatcaagtcgtccaaggtcacatcatcggccagcgtcatcctgcttgtgtggatctgaaagatgcgcctcttggtcttttcatcgggcagggggaactcaattttcctgtcaatgcggcctgcgggtataaaaggtttccagtcacacccctgtggctcccccaggctccgctgtggctcgggaagcctgtctcctcacacctgcagtttcagagggaaacttcccttgtgggaagggtccaaatcttgaaaagtgaacactactctttgtaaatatccacgtttgaattcatcccgtttaaaagaaatcctctctcctctggtaccttcagaaacacacaaactagctactgctgcttttggtgctacccgaatgcgaaattaactggagctaccataggagctatttcttcagaaaaaagactattcattacgggaaagagaaacggtcacaacttaagactgcgatgaaaagggccacgctacgcctactacatcatgctcttagccattacctcagtggaacgcagcttttgggaagttattctacacttcaataatgtatttgccttgatgtgtatcatttttaaatcccctgaaagtgcacttaaacacgaacacgtataaacacactcattctccatgatgggacaaacgcaaatctgacctggtctgataagtgctggatccaaagtttctattcggtttgtggccatgataactttcacgtcaccccttgaatcaaatccatccaactggttcaacagttccaacattgttcgctggatttctctttcaccaccggaatttgaatcgtatctttgaaaaagaagagaagggatgaaaaccgaactgatctgctgaaggggaattataaaaacacctctgatgccctcaattctggcaacaaaatcagcacagcctcccagccaccacataatcttacttaaactgtagatgttttcgtgcctgagatggcatcattaattcagattgcacgtttggtatctgagcccccgacccaaccatgagctcctggaaagccttgtgacaatggctgtgtccccagagtgcagatgatgcctggctcagagtagaaactcaaggcatggctgcacactaatctccagatggtcacgactcccgggtggttgtcacctggcacccaggagcagagcctaaagcatccacagccacgtacagaaggagccaaggcaaacccatgtgcaagccacacaggcagtgctccgtgatcattctcagacaagagctacgaggtctttacctataaaggacacacagagaaaaatgtacctttttgttccaatggcatcaatttcatcaataaacacgatggatggcgcgtgttcttctgcaactcgaaataactcccgaacgagtttgggcccatcacctaggtacttctgaataagttcagagccaaccactcttaggaaagtggctgaggtttggtttgctactgctttggctaataaggttttacctattttaggttagaaaaagaaagacaaagtgaaaaaaccctcaagtgctgtcttaactcgaaaaccctgtcactaccacctaaaacgggcataaaaaacgggcagatccctccgatgaaaaggcatgccaccattccagtgtcttgacattacgttctccaaggcagataagaggaaattcagaatgttctgattatttttaaccatcttcctaaagtcatcatcatagtgtcagaaaatacactttactgggttattcaaacttgcatagaatattattaacccgacgcatgccaccagggtttgggatccaaactctgtgaaacaatcagtgatggaaaaacagcctgagaaccctaggtctgacctaaggaaacactctttagcactaggcctgcagcccccggggccacccgaggcgtcgtggctgtgctggctgggcttccccgaggctcagctgcgacggggccagctcccagtgaaacccacaaatgatagctcttcagacttttctcagtctctgttgtgtccttgtgaggaacttcctctctccaatctcagggaagatctcaaacatttccagtcctgccccgttccttgagatttctatttcaggtcaaaaacaagagatctggcagccattttgtgaactttagggctggaagaccttggcccctttgatggtgagtgaggacaggggcacagggccaagcaggagcatcaggacacggtggcagttagagcagggctggtaaaggaccaaccttaggcccgcgggggaaggggaggaggctgccggggagtaacacggaagacttagttcaaatgggaagaaggacgaggcgctaagctttactacaacatgtggccacgacatccttgtggtgagacagacagagggctgggtgtgaaggcttaaagtgcggagactccccgagagaaccgactagggctggtgaacagaagacaaaaaggacctttctaagtgggtggcatctttcagtccagaagcggccaaggccagctgctgtggcactgcagtagccagagggctcaccgaaccggcttcttcctcctcctgtcaggcccaccaccctgtgcttcaccccagctcctcagatcagtccccagcagtgcacatgcaccaaaggaggcctctcttccagcctcagccctgttgccagctcactcccagagcgaccgcggccttgggctagtggtcactggcctctctgacacttgatttcctgggctgtaagaggacaggctgcagaagctccatgcctccggagctcgtctccacttgtctcccagaccctccactgtgggcagtccccagtcctctcaggatcctcctgggaacgtggtttcaattcattcaaataactgtgcttcctctggaatttacacagcgatgtactgctaagtcctggactgtacaacttactcaggtcaactagtcacacggtgaaccaaatatatgtgtttttatcttca
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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