2024-04-26 07:29:56, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XR_003515620 4235 bp RNA linear MAM 06-AUG-2020 DEFINITION PREDICTED: Zalophus californianus NRDE-2, necessary for RNA interference, domain containing (NRDE2), transcript variant X2, misc_RNA. ACCESSION XR_003515620 VERSION XR_003515620.2 DBLINK BioProject: PRJNA602522 KEYWORDS RefSeq. SOURCE Zalophus californianus (California sea lion) ORGANISM Zalophus californianus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Otariidae; Zalophus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_045600.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process On Aug 6, 2020 this sequence version replaced XR_003515620.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Zalophus californianus Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4235 /organism="Zalophus californianus" /mol_type="transcribed RNA" /isolate="mZalCal1" /db_xref="taxon:9704" /chromosome="6" /sex="male" /tissue_type="blood" /country="USA: California" /lat_lon="37.858768 N 122.484010 W" /collection_date="07-Jul-2018" /collected_by="Frances Gulland and Jochen Wolf" gene 1..4235 /gene="NRDE2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns" /db_xref="GeneID:113908852" misc_RNA 1..4235 /gene="NRDE2" /product="NRDE-2, necessary for RNA interference, domain containing, transcript variant X2" /db_xref="GeneID:113908852" ORIGIN
gcgaaggcctcactaccggcgtccgctcaccggcgccatttctgtcgaagggaacggcagtgcggcctgtgatcatggcgctgttcccggcctttgcgggcattggtgacgctcccaatagcggcagcgccaggaaagaattagattggctgagcaacccgagcttttgcgttggagccataacctctctgagccaacaacctgaagaggctgctgctctggtttctgaagggtcaccgctgacgaggagtcctctgaaatcagagccttcggatgaaagtgatgctaacagaaagcccaaacaaacaagcagaaaaaagaagaaagagaaaaagaagaagaggaaacatcaccacaagaaaaccaagagaaaacgtgggcaggccagtagcagtggctccgagccagatagtgagcctgaagaggacaaaacttccagaagcactggagacggtagaaaggaatcagagaaaccaagtcaagaaggtaatgctgccgctgatattgggcatcgctttgtttggcttgaggacgttcaggctctgactggagaaaccttcagaacagataagaaaccggatccggccaactgggagtataagtctctctaccgaggagacatagcaagatacaagaggaaaggagactcctgccttggcattaaccctaagaagcagtgtatatcctgggagggggctgccgcaggaaagaagccttcacacaagcatgttgagcgctattttacgaagaagagcgtgggcttaatgaacgttgatggagttgctgttggcagtaaaactgaacctccctcatctgagccaatctcctttatccctgtgaagggcttggatgatgtgattcctcccgttatgacctggttgaaccctctggggatttacgatcagtccaccacgcagtggttacaagggcagggtcctccagagcaagaatcaaagcagccagactcccagacagacagagagcgtgcgctgctcaaggccaaggtggaggagttcaacaggagagtgcgggagaaccctcacgatattcagctgtggatggcgttcgttgcttttcaggacgaggtcgtgcggagccctggcctgtatgccctggaggagggggagcaggagaagcggaagaggtctgtgaagctggtgctggagaagcagctggccatcctggagcgggccattgagagcaaccagagctccgtggagctgaagctggcccggctgaagctgtgcgcggagttctgggagccctcggcgctgctcaaggagtggcagaaactgatatttgtacaccccaacagtacggccctctggcagaagtaccttttattttgccaaagccagttcagcaccttcaccgtgtccaagatccacggtctttacggcaaatgcttgagcactctgtccgcggtgcaggacggcagcatcctgtcgcaccccgccctgcccggcaccgaggaggccgtgttcgctctctttcttcagcactgtcacttcctgcggcaggccggtcactctgagaaggcgatctcgctcttccaggccatggtggacttcaccttcttcaagccagacagcgtgaaagacctgcctaccaaaggacaggtggaattctttgagcccttctgggacagcggggagccccgggctggggagaagggtgctcgaggctggagagcctggatgcaccagcaggagcgaggcggctgggtggtcatcagtccagatgatgatgatgacgaaccagaagacgaggaccaggaaataagagatacaagtctgcccaggtggcagatctggctcgccgccgagcggtcccgagaccagaggcactggcggccgtggcgccctgataagaccaagaagcaaaccgaggaagactgtgaggacccagagagacaggtgctgttcgatgacattgctcagtctctgatccagctctccagccaggatcttcagtttcagctggttgcggcctttctgcagttcctgggcgtgccttctggcctcagccccccagcctcctgcctctacctggccatggatgaggacagcatcttcgataatgggcttcatgatgaaaagccactgacttttctcaacctgtccctttccggcgtcagctgtgttggccgctcagacccactgggctgccgccgctggacccgcgggcacaatcgagagggcgaggagttcatccgcaacatctttcaccttgtgatgcctctgttttcaggccaggagaggtctcagctgtgcttctcctggctacagtacgagatggcaaaggtcatttggtgtctgcacactaaaaacaagaagaggttaaagtcgcaaggaaagaactgcaaaaaactcgccaaaaacctccttaaggagccagaaaaccgcaacaatttttgcctctggaagcagtacgcacatgtggagtggttgctcggcaacaccgaggacgccaggaaggtgttcgacgcggcgctcagcctggcggggagcggagaaccgcgggggtgcgagctctgggagctcggccgcctctacgcggggctggagctggagctggagctggagctctcgccggccgcgagaggggccgccacggcccgagccgtccacatactgaccagactgacggagaatggtccctacgcaccctactccgggccggtcttggccgttcacgttctgaaggcccggaaggcttacgaacacgcgctgcaggactgttgggggcagagctgtggctccggtccggctcccgccgacgcctctcaccgcctcaccggcccgctgcagtgcttcatgctcttccagtacttgaccgtggggatcgatgccgcggtgcggctctacgagcaggcgtgtgcgaagctgcggggctcggtctccccgggcggctgtggcccggacgagcccggctgcgcgcagagcccgggccgcggtctcgaggccgtcacgctgacgcacacgagcctgctccgcttccacgcgagagtcagcgtttgccccgtggctcctctgcggcaggtgctctcggacgccttacggtggtacccgggcaaccaggttctgtggagggcctacgtacagattcagagtcggtcccacgcggccagtaagaccagaagattcttcgatgccatcaccaggtctgccaaacccttggagccgtggctatttgcgattgaagccgagaagatgaggaagaggctggtggaaagcgttcagagggtgggtggcagagaggtccacgccacaattcctgagaccggcttgacgcatcggatcaaagccctgtttgaaaatgctttgcggagtgacagcggcagccagtgccccttactgtggagaatgtatttgaactttctggtctccttgggaaacaaagaaaggagcaaaggcgtgttctacaaagcacttcagaattgtccttgggcaaaggcgctgtacctggatgccgtggggcacttccctgaggagatgcaggaggtcctggacctgatgacggagaaggagctccgggtgcgcctgcccatggaggagttggagcttctgctcgaggactagagaccaggaggtgttcaacaggccctgccttccaggcctcgccacctgccccgccggggccaggctgcaaaggacggggcacgcgtaagacgaaattgctttctcttctctgaggccggctctcaaacaaaaccgcaacgcctctgccaacgttgtcgttctttggcacctcatccagaaaagccagtgtcgtggaacagaattttggtgcgaaacagctggaaaaggaggctggcgagtcagagcccccgaggaaggtggccggccagccagccaagtggacgcttgccgtgtctgcccggctcactccctggctcgcacacggacctgctcagaaaggagaggagtgctggaaacagatggggggaagggaagctctgacgtggttttgaacaccctggagatggatgaggtttctgaacctgagaacgagggatgccagggcagggggagggacgtcagccagggcctgtggagagtcctactaggaaccccactactcctttcctgccccagagtgctaagaacccacaggctccagaccttccaaaatgaaaagctgtttccttctgaagccagagccatactcttcaacggcagagcccactggctttaggggtcctgctttcccactagctgctgtccagctctgcc
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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