2025-02-22 14:00:09, GGRNA.v2 : RefSeq release 228 (Jan, 2025)
LOCUS XR_003443741 2067 bp RNA linear VRT 20-APR-2022 DEFINITION PREDICTED: Tachysurus fulvidraco vimentin like (viml), transcript variant X4, misc_RNA. ACCESSION XR_003443741 VERSION XR_003443741.2 DBLINK BioProject: PRJNA826113 KEYWORDS RefSeq. SOURCE Tachysurus fulvidraco (yellow catfish) ORGANISM Tachysurus fulvidraco Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Bagridae; Tachysurus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_062539) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Apr 20, 2022 this sequence version replaced XR_003443741.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Tachysurus fulvidraco Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2067 /organism="Tachysurus fulvidraco" /mol_type="transcribed RNA" /isolate="hzauxx_2018" /db_xref="taxon:1234273" /chromosome="22" /sex="female" /tissue_type="muscle, blood" /dev_stage="adult" gene 1..2067 /gene="viml" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns" /db_xref="GeneID:113655525" misc_RNA 1..2067 /gene="viml" /product="vimentin like, transcript variant X4" /experiment="COORDINATES: polyA evidence [ECO:0006239]" /db_xref="GeneID:113655525" ORIGIN
atgtcgaccatctcctccaccactatctcgtcctaccgaaagcggtatggtcacgagagcagggccacgactgccgcgcgagggcaatccgacgcgccggcgatgctctacgcgagcagcaagaccaccggagcgtggagcggaactgtgtcggcggcggatgagactcacgacgtcagtctgtccggagcccttaacgccgattttaaagtctctcgcggcagcaataagtcgcttaacgaccgcttcgtcagttacgtagagaaggtgcagttgttggagcagcgcaatgaggctctgcgcacggagctggagcgctatcgtgggaacggaccctcgcgcatcgccgagctgtgcgcgcacgaagtggcggatctgcggcggcacgtggaccagctgaccaatgagaaagcgcgggcggagatacaacgggacaacttactcgtggacatagaacggatccgtgcgaagctgcaggaggagattctgcagagagagcaggctgagaggagcacacagagcttcagacaggatgtgaacattgctgctctagcacgagtggacctggagaggaaagtggagtcccttcaggacgaaattcggttcctgaagaagctccatgaagaggagctgagagagatacaggctcagagccagcagcagtctgatctgacctccgccctcagggaaatccaggtgcagtacgagaacctggcctccaagaatgctcacgtgtctgaggagtggtacgactccaagtcctatctgtcatggcttaaatctctccatattgtggatgcggaattgcagttcgccgaactctctgaagtcgcaaacagaaataaagaaactctgcgagcggccaagcgagaggccaatgagttccggtaccaggttcaggctcttaaccgtgaagtggacgccctcaaggggacaaacgaggctctggagcgacagatgagacagacagaggagaactttgctctggagtccacggcttatcacaacaccatcagccgtctgaaggaaaacatcctggacctaaaagaccagatagctcgaaacctgcacgagtaccaggacctgctcaacgttaagatagcgttggacatcgagatcgccacctacaggaggcttatagaagaccctgtgctggagtccagaacctccacgaaggttctcatcaagaccactgagatcagagatggagagcacaagtcacgcgaggaaacttctagattatagtaataaaacacgagagagagagagagagagcgagagagagagagggagagagagtgcttaatgagtctacgcagaaccgtgaagaaccggaatgacctccttctttccctacttcgattcacacctcgtcgaaacacacaacacacaacacacagcagcatcatccgtccctgtgaggcctacagaaataaccgccgtccctcagctgctacttttccagtgctttattcactcaggagttgactgagttctttcttctgaaattaacattaacgataataacgtctgagaaaccagacagcttttcactactttgaactgttaagatgattattttaagcattcaactcttttttttttttttttttttaattaatatagtagagaaatgttaggtgaattatttttcatgtagttactggataataagatcccaaatcttttggaaatgttttagaagttagtgagcgaaattaagtcattttaatacagtaaatgtttaacatctgggttcaaatccgatagaaagaaatcagtatataatgtgaagatgagcagaacaaaggatgagtgtaaaacttcctgcttcttcacattagggattcttcatactagtaaagttttaagagggcttaggcacaatgttttattcttcactgttcaaggttctttatttgtcacatacgtattacatgcagacatgtggggcgtttttccttagttcctcatgcaacgttgcgagaacggacagaaccgacatcaaactactgtaactgaggacttattatgaatataatcaaatctattaaacttctaattaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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