2024-03-30 00:57:28, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XR_001858270 1719 bp RNA linear VRT 13-NOV-2020 DEFINITION PREDICTED: Pygocentrus nattereri vimentin like (viml), transcript variant X2, misc_RNA. ACCESSION XR_001858270 VERSION XR_001858270.1 DBLINK BioProject: PRJNA675604 KEYWORDS RefSeq. SOURCE Pygocentrus nattereri (red-bellied piranha) ORGANISM Pygocentrus nattereri Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Pygocentrus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_051229.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Pygocentrus nattereri Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1719 /organism="Pygocentrus nattereri" /mol_type="transcribed RNA" /isolate="fPygNat1" /db_xref="taxon:42514" /chromosome="19" /sex="male" /tissue_type="liver" /dev_stage="adult" /country="Netherlands: Dejong Marinelife, Rotterdam" /lat_lon="51.9244201 N 4.4777325 E" /collection_date="21-Nov-2018" /collected_by="Nidal Karagic" gene 1..1719 /gene="viml" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 47 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns" /db_xref="GeneID:108433078" misc_RNA 1..1719 /gene="viml" /product="vimentin like, transcript variant X2" /db_xref="GeneID:108433078" ORIGIN
aaagctggccgccttcactccgtctttccgagctctaagtgagtccagctgaggcagaagttgaggtttagagcttcagagggtcagacaggcagtagcatgtcccgaatctcctccaccatctcctcctaccggaggcgcttcggcgatgaccggagccgcgtgctctcctcctcgctgcggtcgcgcacgtcctccgccccggtgctgcacgcgatctctagcgcgagggcgcgcgcgtccaccctgtccctgtccgcgccggcgccggacttctctctgagcgacgccgtgaacgcggagttccgcgcgaaccgcacgaacgagcgcgcgcagctgcagtccctgaacgagcgcttcgcgagctacatcgagaaggtgcgcacggcagagcagcggaaccgcgcgctgagcgcagagctcgagcatctgcgccgcggacagggggcctcgcgcgccgcggagatctacgatgaggagctgcgcgcgctgcgcaggcaggtggatgagctgaccggagagaaggcgcgcgccgaggtggccagagataatctaatacaggacatcgagaggctccgagagaagcttcaggaggagattctacaaagagaagaggctgagaacagcatgcagtgcttcagacaggatgtggataatgcagcacttgcccgggtggacctggagcggaaagtggactctctgcaggatgagattacctttttgaagaagcttcatgaggaggaaatgacagaagtccaagctcaaatccagcagcagcatgcacaggtggatctagacatggccaagcctgacctgactgctgctctcagggacgtccggcagcagtatgagagcctggccaccaagaacatacaggagtctgaggagtggtacaagtctaagtttgctgatttgaccgaagttgccaacaggaataatgatgctctacgtgcagccaagcaggaggccaatgagtaccgccggcaggtgcaggctctcacctgtgacgtggatgccctcaaggggacaaatgagtctctggagcgtcagatgaaagagttggaggagaactttgccatggagtcctcaggttaccaggacaccatcagccgtctggaggaagacatccacagcatgaaggatgagatggcccgccacctgcgggagtaccaggatctgctcaatgtcaaaatggccctagacattgagattgccacctacaggaagctgctggaaggggaggagagcagaaaccatgctggagtccagacctatgattgaaagcacaacaaccaagaaggtgctcatcaagaccattgagaccagagatggccaggtgattaatgagtctacccagaaccatgaagatctagagtgaccagaaactggccccgctggacctcacacctcggtctgactcgcccagcaacacataatacaaagagcaccactcacgctccctatagacgcaaagaaacagctgctaccccttcgatgcgcataaatgactgctttccagtgccttttctgccagattaaggacttagatccactgtctaggtgttgaagttacagtaatagcaatagcggccctctgataagagccatttcagtatttacttaaatagatcagactggaactgctttaacaagcttttataagccaacagaacgttgtcagtaaatacttgcaccaataaagtctgtggaggatggaga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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