2024-04-27 09:47:39, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_767934 2778 bp mRNA linear PLN 13-SEP-2023 DEFINITION Cryptococcus neoformans var. neoformans B-3501A hypothetical protein (CNBJ3030), partial mRNA. ACCESSION XM_767934 VERSION XM_767934.1 DBLINK BioProject: PRJNA19119 BioSample: SAMN02953604 KEYWORDS RefSeq. SOURCE Cryptococcus neoformans var. neoformans B-3501A ORGANISM Cryptococcus neoformans var. neoformans B-3501A Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus neoformans species complex. REFERENCE 1 (bases 1 to 2778) AUTHORS Fung,E., Hyman,R.W., Rowley,D., Bruno,D., Miranda,M., Fukushima,M., Wickes,B.L., Fu,J. and Davis,R.W. TITLE Cryptococcus neoformans serotype D sequencing JOURNAL Unpublished REFERENCE 2 (bases 1 to 2778) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (13-SEP-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2778) AUTHORS Fung,E., Hyman,R.W., Rowley,D., Bruno,D., Miranda,M., Fukushima,M., Wickes,B.L., Fu,J. and Davis,R.W. TITLE Direct Submission JOURNAL Submitted (08-JUL-2004) Stanford Genome Technology Center, 855 California Avenue, Palo Alto, CA 94304, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_009186). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..2778 /organism="Cryptococcus neoformans var. neoformans B-3501A" /mol_type="mRNA" /strain="B-3501A" /variety="neoformans" /serotype="D" /db_xref="taxon:283643" /chromosome="10" /note="lacks telomere sequence" gene <1..>2778 /locus_tag="CNBJ3030" /db_xref="GeneID:4938646" CDS 1..2778 /locus_tag="CNBJ3030" /note="Match to ESTs gb|CF193627.1|CF193627, gb|CF185907.1|CF185907, gb|CF193628.1|CF193628; HMMPfam hit to PAZ, PAZ domain, score: 78.9, E(): 1.3e-20; HMMPfam hit to Piwi, Piwi domain, score: 291.2, E(): 1.6e-84" /codon_start=1 /product="hypothetical protein" /protein_id="XP_773027.1" /db_xref="GeneID:4938646" /translation="
MAPKLAPQGDVTSAFSNLSFGDLPRGMQETLDGCPPRPGYGSSGKGITVNANMFMARFRKQGLTVNHYDIEINPVIKTKEAKKPRPLLQKIWNQMVADATGPVKEALEAAAYDQQKSFYTPHTLPMEGGKLEIIVGLVEDGIVPTDDRRRFRAVIQPAENMKIDLDTIMDYCKGDTQTEQARDTMLRAVMAVNVLFRQDPAQRFTMSGAAGRKFFTDEDGTPLSNGAVLYKGFQQSFRWTSAGFPAVQIDTAYSAFVEPGMLVDVAPKVLGLAPSGGFGGRGGRGGRGGPPRGGFMGAAPGPARPIQELNPAQTKRLNDILRGAKFTVTHRKTERVFSIIKLTSQPADNIKFTLNGKDGQPDRTVSVAQYFQEQYNVRVTRPRLPCVQYGKNFIPMEFVKLEPFNSIPMMRITPDQTAEIIKDAAKPPPMRQSAIAAWRQKLNYSNLPKLKAWQVEVNTNMMAVPARVLPAPSVIYEGNKTIRANFGGWNMKGVRFTKAGKPLVSWAVISFDERCTVPDLQKFVTYFVNVLGQYNCPVQNKRPVCFQYNPNAGGPNMGIKPALQQAAKNSYMETKANPQIIFCILPKKDPSIYQAIKACAAEQLFKPVVTQCLQSLKIKSDRGIEQYCGNVAMKVHAKLGGLTHQVSHQLERTTMMVGADTGHPPAKGGALPPSIAVTVAAVNGENNRFVSGVRLQEGRVEIIQDLENMMATHIQTFEKNTGAKPLSILFFRDGVSEGQYAHCVNQELKSIKKAAAKFGNYNPKVTFVICAKRHSMRFFASSDADKDRTGNLPPGTVVDSLVTSPIIHDFYLQAHAGLQGTARPTHYVVVADENKYSADKLQGLVNVLCYSYARATRSVSLVPVAYYADIVAEKAREWIYNDDSETATVPSTASGSRVEQMSFDALRISKRFESNPEFNSVAWFM"
misc_feature 625..774 /locus_tag="CNBJ3030" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 910..1203 /locus_tag="CNBJ3030" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1009..1011,1054..1056,1099..1101,1111..1113, 1165..1167,1174..1176,1180..1182) /locus_tag="CNBJ3030" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1342..2637 /locus_tag="CNBJ3030" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1777..1779,1789..1791,1831..1842,1849..1851, 1879..1881,1888..1890,1900..1902,1912..1914) /locus_tag="CNBJ3030" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1978..1980,1984..1986,2197..2199,2605..2607) /locus_tag="CNBJ3030" /note="active site" /db_xref="CDD:240015" ORIGIN
atggctcccaagctcgcacctcagggtgatgtcacctctgcgttctccaatctttcctttggggacctccccaggggtatgcaggagactcttgacggttgccctcctcgtcctggttacggatcttccggaaaaggcatcaccgtgaacgctaacatgttcatggcccgatttaggaaacagggtctcactgtcaaccactacgacattgagatcaaccctgtcatcaagactaaggaagccaagaagcctcgacctctcctccagaagatctggaaccagatggtcgccgacgccactggtcccgtcaaggaggctcttgaggctgctgcgtacgaccagcagaagtccttctacacccctcacacccttcccatggagggcggcaagctcgaaatcatcgttggtcttgtcgaggacggcattgtcccgactgacgacaggcgacgattcagggccgtcatccagcctgctgagaacatgaagatcgaccttgacaccattatggactattgcaagggcgacactcaaactgagcaggcccgagacaccatgcttcgtgccgttatggcggtgaacgtccttttccgacaggaccctgctcagaggtttaccatgtccggtgctgctggccgaaagttcttcactgatgaggatggtactcccctttctaacggtgccgtcctctacaagggcttccagcagtccttcaggtggacctctgccggtttccccgccgttcaaatcgacactgcctactctgcttttgttgagcccggcatgcttgttgacgtcgctcccaaggttcttggtctcgcaccttctggcggttttggtggccgaggtggccgtggtggccgcggcggtcctcctcgaggtggctttatgggcgccgctcctggtcctgcccgaccaatccaggaattgaaccctgcgcagactaaacgtctcaacgacatcctccgaggcgccaagttcaccgtcacccatcgaaagactgagcgtgtcttctccatcatcaagttgacttcccagcctgctgacaacatcaagttcactctcaacggcaaggacggtcagcctgaccgaactgtttctgttgctcagtacttccaggagcagtacaacgtccgagttacccgacctcgtcttccttgcgtccagtacggcaagaacttcatccccatggagtttgttaagcttgagcctttcaactctatccctatgatgaggatcacccctgaccagaccgctgagattatcaaggacgctgctaagcctcctcctatgcgacagagtgctatcgccgcctggaggcagaagcttaactattctaacctccccaagcttaaggcttggcaggtcgaggtcaacaccaacatgatggctgttcccgctcgagtcctccccgctccttccgttatctacgagggtaacaagaccatcagggccaacttcggtggctggaacatgaagggtgtccgattcaccaaagccggcaagcctcttgtctcttgggccgtcatctcctttgacgagcgatgtaccgttcctgatttgcagaagtttgtcacctactttgtcaacgttttgggtcaatacaactgtcccgtccagaacaagcgacccgtttgcttccagtacaaccctaacgctggtggacccaacatgggtatcaagcccgctttgcagcaggctgccaagaactcctacatggaaactaaggccaacccccagatcatcttctgtatccttcccaagaaggatccctcaatctaccaggctatcaaggcttgtgctgccgagcaacttttcaagcctgtcgttactcagtgtctccagtctttgaagatcaagtccgaccgcggtatcgagcaatactgtggtaacgtcgccatgaaggttcacgccaagctcggtggactcacccaccaggtttctcaccagctcgagcgaaccacaatgatggtcggtgccgacaccggccaccctcccgccaagggtggtgctcttcctccttctatcgccgtcaccgtcgccgccgtcaacggtgagaacaaccgattcgtctctggtgtgcgactccaggagggccgagttgagattatccaggatcttgagaacatgatggctactcacatccaaacctttgagaagaacactggtgctaagcctctcagcatcttgttcttccgagacggtgtctctgaaggtcaatatgcccactgcgtcaaccaagagctcaagtccatcaagaaggccgctgccaaattcggcaactacaaccctaaggttacctttgttatctgtgccaagaggcactctatgcgattcttcgcctccagcgatgccgacaaggacaggaccggcaacttgccccccggaaccgtcgtcgactctttggttacctctcccatcattcacgacttttatttgcaagcccacgctggtttgcagggtactgctcgacctactcactacgttgtcgtcgccgacgagaacaagtactctgccgacaagctccagggtttggtcaacgtcctctgttattcttacgcgcgagctacccgatccgtctctcttgtgcctgtcgcttactacgccgacatcgtcgccgaaaaggcccgagagtggatctacaacgatgacagcgagaccgctaccgttccctccaccgcttctggttctcgagttgagcagatgtccttcgatgctctccgaatcagcaaacgattcgagagtaaccccgagttcaacagtgtcgcttggttcatgtaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]