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Previous release (v1)
2025-10-24 04:57:16, GGRNA.v2 : RefSeq release 232 (Sep, 2025)
LOCUS XM_071234654 3268 bp mRNA linear INV 13-FEB-2025
DEFINITION PREDICTED: Haliotis cracherodii phosphatidylinositol-3-phosphatase
SAC1-like (LOC139453025), mRNA.
ACCESSION XM_071234654
VERSION XM_071234654.1
DBLINK BioProject: PRJNA1220611
KEYWORDS RefSeq.
SOURCE Haliotis cracherodii (black abalone)
ORGANISM Haliotis cracherodii
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Gastropoda;
Vetigastropoda; Lepetellida; Haliotoidea; Haliotidae; Haliotis.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_027266265) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Status :: Full annotation
Annotation Name :: GCF_022045235.1-RS_2025_02
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 10.3
Annotation Method :: Gnomon; cmsearch; tRNAscan-SE
Features Annotated :: Gene; mRNA; CDS; ncRNA
Annotation Date :: 02/12/2025
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..3268
/organism="Haliotis cracherodii"
/mol_type="mRNA"
/isolate="W230"
/db_xref="taxon:6455"
/chromosome="Unknown"
/tissue_type="Epipodial tissue"
/dev_stage="adult"
/collection_date="2020-07-20"
/collected_by="Blythe Marshman"
gene 1..3268
/gene="LOC139453025"
/note="phosphatidylinositol-3-phosphatase SAC1-like;
Derived by automated computational analysis using gene
prediction method: Gnomon. Supporting evidence includes
similarity to: 9 Proteins"
/db_xref="GeneID:139453025"
CDS 34..1806
/gene="LOC139453025"
/codon_start=1
/product="phosphatidylinositol-3-phosphatase SAC1-like"
/protein_id="XP_071090755.1"
/db_xref="GeneID:139453025"
/translation="
MAVHDSLRLHITSDKFIIEPTDAGANELLVIDRVSQEITLQVNQGQIPAAAITKLIYGVVGIIRLVAGPYLIVMTKREKVGEINGHTIWRLIDTETHSYKRTMLHLTEQQASHNRSYLSMVELILKTDAFYFSNTFDLTHSLQRLQNTSSDFSSLALHERADQRFVWNGHILRELAQQPELGQYCLPMVHGFLSINSTSINNKSFDYIVISRRCIYRAGTRFYVRGVDTEGQVANFVETEQIVQCDGIRCSFVQTRGSIPLFWSQKPNLKRMPLPVINSATNHMDGFQRHFDDQIYNYGKQVLINLVNQKGYELQMEQAFAQTVVNSQNSNIRYESFDFHKECSKMRWDRLSILTDKLAEERRQFGYFMHGKDGSVVSSQQGVFRTNCMDCLDRTNVVQSLLAKDNLLDQLQRLGVLAQGARVPEKCQFDTVFKNVWADNADTLSKQYAGTGALKTDFTRTGKRTKMGLMMDGWNSLIRYFRNNFQDGFRQDAIDLFLGNYQVEETEGLTTPSPLTVERDWKFYAIPVIFLVAMAMFVISILLPDEHFSEQVMYVFFWGAASAIALTVMFAFGSEYVDQPKLTQVKTKTE"
misc_feature 199..1662
/gene="LOC139453025"
/note="Phosphoinositide polyphosphatase (Sac family)
[Signal transduction mechanisms]; Region: COG5329"
/db_xref="CDD:227637"
ORIGIN
cttgatggaggagcattccacgtcaccgtgaaaatggcggtgcacgattcccttcgattacatatcacatctgacaagttcatcatagagccaactgatgcaggagctaatgagcttctggtcatcgacagggtgtcccaggaaataacactacaagtgaaccagggccagattccggccgctgccatcaccaaactcatctatggagttgtgggaatcatccgacttgtggcgggtccgtatctgattgtgatgacaaagcgggagaaggtgggtgagatcaatggacacacgatatggcggctgatcgacacagagactcactcctacaagagaaccatgctgcacctcacagagcaacaggcctcccacaaccggagctacttgtccatggtggaactgatcctgaagaccgatgcattctacttctccaacacgttcgacctgacacactcactccagcgcctccagaacaccagctccgacttctcatcactcgccctgcatgagagggccgaccaaaggtttgtgtggaatggccacatcctgagagagttggcccagcaaccagaactggggcaatactgccttcccatggtgcatggcttcctcagcatcaactccaccagcatcaacaacaagagcttcgactacattgtcatctcccgaaggtgtatatatcgagctgggacccgattctacgtccgaggagtagacactgagggccaggtcgccaacttcgtagaaactgaacaaattgtgcaatgtgatggcatcagatgttcttttgtacagacgcgtggctccatcccgctgttctggagccagaaacccaacctgaagcggatgcccctgccagtcatcaacagtgccactaatcatatggatggcttccagcggcactttgacgatcagatttacaactatgggaaacaagttctcattaatctcgttaaccagaaaggctatgagcttcagatggaacaagctttcgcccagacagtggtcaactcccagaactctaacatcagatacgagtcttttgacttccacaaggagtgcagcaagatgcgatgggaccgcctgtccatacttacagacaagctggctgaggagaggagacagtttgggtacttcatgcatgggaaggacggtagtgtggtgtcatcacaacagggtgtattcagaaccaactgcatggactgtttggaccgcaccaacgttgtccagagtcttctggctaaagataacctacttgaccagctccagagactgggagtccttgcacagggagcacgggtcccggagaagtgtcagttcgacacagtcttcaagaacgtgtgggccgacaatgcagacactctctccaagcagtatgccggaactggtgccttgaagacagacttcacaaggacggggaagaggaccaagatggggctgatgatggatggctggaactccctcatcaggtacttccgcaacaacttccaggacggtttccgacaggatgccattgatctgttcctgggcaactaccaagtggaggagacggagggcctgaccacaccctcccccctcacggtggagcgggactggaagttttatgctatacctgtgatatttctggttgctatggcaatgtttgtgatcagcatcctgctgccagatgaacacttcagtgaacaagtgatgtatgtgtttttctggggagctgcctccgcgattgccttgacggtcatgtttgcattcggcagtgaatatgtggaccaacccaaactcacccaagtcaagaccaagacagaatagctatatgatcggggaatattcattgtgtgatgcagtctttaggctttacagtgttgtgacgatgctcttctagcggtcaccggatggatatcatgctgttgattgaacccaccctatgacgtgcgggcatgctttatgtaaaacacactttggtaattcaagatgagaacagcgcggttttagtaatctgttctcaaagaaattagtttcattatcattcttggcattgaacagtcacacatttaatttgttgttgttattgtccctggcaaagacatttacaaagtcggagtcttcagcaggcctgaacaaaagtgtccggatgaattcatttcctgggtcatggaacaggggtcatggaacaaaacattttgacattttccttaattttgtactttgtggcatggattgagatttgagaagcgactgttaaacaagttgatgcaggtttacaaagcgtattctgtagttcctctgtgactgtagtaggaccactggttgacatgtcgtagtttgtctcagtgaacgtactacagatagtacctttacactcctacattacaccttgaaagtgttgtatgtgtgtcaaagtgaaggacttatcgacaggcatcggaaccagagtctattgtgctcttcctgtttgtagtcctatctggggtcagattgacagatgtattgacatttaaacagtgacattcctgtaacacaattaaattaattctgacacttgttgtctgtagtagccatgttctccctcagagtggaggatccgtaccaacacactggaacagcaggtcactctgacctccgctaacacacaacagacagcaggaacagcaggtcactctgacctccgctgcacacagcagacagcaggaacagcaggtcactctgacctctgctgcacacagcagacagcaggaactgtaggtcactctgacctccgctgcacacagcagacaggaactgtaggtcgctctgacctccgctgcacacagcagacagcaggaactgtaggtcaccctgacctccactgcacacaacagacagcaggaacagcaggtcactctgacctccgctgcacacagcagacagcaggaacagcaggtcactctgacctccgctgcacacagcagacagcaggtactgtaggtcactctgacctccattgcacacagcagacagcaggaacagcaggtcactctgacctccgctgcacacaacagacagcaggaacagcaggtcactctgacctctgctgcacacagcagacagcaggaactgtaggtcactctgaccaccgctgcacacagcagacagcaggaactgtaggtcactccgacctccacacagatgacagtagaatacaaagcctctctatagttactgacttgttggtatgagtatatctacctgtatatctatctgtattggaggctagctagttactgcagggtac
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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