LOCUS       XM_069547582            2978 bp    mRNA    linear   MAM 12-DEC-2024
DEFINITION  PREDICTED: Ovis canadensis vimentin (VIM), mRNA.
ACCESSION   XM_069547582
VERSION     XM_069547582.1
DBLINK      BioProject: PRJNA1175682
KEYWORDS    RefSeq.
SOURCE      Ovis canadensis (bighorn sheep)
  ORGANISM  Ovis canadensis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia;
            Pecora; Bovidae; Caprinae; Ovis.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091257) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_042477335.2-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/06/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2978
                     /organism="Ovis canadensis"
                     /mol_type="mRNA"
                     /isolate="MfBH-ARS-UI-01"
                     /db_xref="taxon:37174"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="lung"
                     /dev_stage="fetus"
                     /geo_loc_name="USA: Washington State University, Pullman"
                     /collection_date="2022-05-14"
                     /breed="Bighorn"
     gene            1..2978
                     /gene="VIM"
                     /note="vimentin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 108361 long SRA reads, 18
                     Proteins"
                     /db_xref="GeneID:138417439"
     CDS             1261..2661
                     /gene="VIM"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="XP_069403683.1"
                     /db_xref="GeneID:138417439"
                     /translation="

MSTRSVSSSSYRRMFGGPGTASRPSSTRSYVTTSTRTYSLGSALRPSTSRTLYTSSPGGVYATRSSAVRLRSGVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQEQHVQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFSVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLPLPNFSSLNLRETNLDSLPLVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"

     polyA_site      2978
                     /gene="VIM"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

ggggggagggggaggccgagaggggaccagggagaagagtgagggggaacttggcaagaacctccccggagtgcatttgtgatgccccagacccgcgttcggcgcttatagaatgtgtgcagaagtttcttactacagagaagcctgcatatcggagcaaaatctggctttgtcgggttcttaagaactcaggcgcgcgctagtcttcacgcaggcgaactgcccacgagaaagctgaggcccagctcgaagttgtgttaaacttcgacaaacagtgcgcgcaggcccggggaggctggagtcaatctcgtctaacggtttccctgtaccgctaggagccttcggcgggacagccgggtgcagtgactcagtgccagtgactcagcgaccccacccttctcccccgggctttcctcggccgccgcctcgaagcgcgcaccgtccaaaggggacccagtccgttaggtccctgaacaggaattcccaagacaagaggacgaagagagacggggtccgcatcggatcctctttcgaagcgggctgtgcacacactcctgcgcggggcccaagccctgcgtccagagctgtgcgcgcccccacctcgcgctctaatctcaggccctctttgtttctttctccacgcctccagttctgcgggatcctgcactccccctcctcctgcttcttggcccgcggggctccgcatcctctctctcccagtaaagcgcaacccagctgcggcgcgcccctcccacccgcgcgcctcctcctacagctctttggcgcggagcccgggacccctctggtccagtcctggcgggttccccctgcaccactgcgcgacccctcctttatcagcacccagaggtgagcagagctcgggccaccatcaggaaagcccctgaaagtcccagcccagctaagaagtaacgggactgtgctcagtccccgttggggcagatgggggaggaggacggctccggggcgcccccgccccaaccccccgcccagccttccccattggctggcgcactccgtcgccgggatggcagtgggagggaaccctcttacctaacgcggttataaaaactgcgccccgcgcggggtccggtcctctgccactctcgctccgggctccccgcgccagagacgcagcaccgctccctctgcccacacccaccgcgccctcgcgctcgcctcttctcccggagccagtccgtgctaccgcagtcgcccagtccaccgccaccctctgcagccatgtccaccaggtccgtgtcctcgtcctcctaccgcaggatgttcggcggcccaggcaccgcgagccggccgagctccacccggagctacgtgaccacgtccacccgcacctacagcctgggcagtgcgctgcgcccctccaccagccgcaccctctacacctcgtccccgggtggcgtgtacgccacgcgctcctcggcagtgcgcctgcggagcggcgtgcccggcgtgcggctgctgcaggactcggtggacttctcgttggccgacgccatcaacaccgagttcaagaacacccgcaccaacgagaaggtggagctgcaggagctcaatgaccgcttcgccaactacatcgacaaggtgcgcttcctggagcagcagaacaagatcctgctggctgagctcgagcagctcaagggacagggcaagtcgcgcctgggggacctctacgaggaggagatgcgagagctgcgccggcaggtggaccagctcaccaacgacaaggcccgcgtcgaggtggagcgcgacaacctggccgaagacatcatgaggctccgggagaagttgcaggaggagatgcttcagagagaggaagccgagagcactctgcagtctttcagacaggatgttgacaatgcctctttggcacgtcttgacctggagcgtaaagtggaatccctgcaagaagagattgcctttttgaagaaactgcacgatgaggaaatccaggagcttcaggcccagattcaagagcagcacgtccaaatcgatatggatgtttccaagcctgacctcacggctgccctgcgtgatgtccgtcagcagtatgagagcgtggccgccaagaaccttcaggaggctgaggaatggtacaagtccaagtttgctgacctctctgaagctgctaaccgcaacaacgacgccctgcgccaggccaagcaggagtcgaacgagtaccgccggcaggtgcagtctctcacctgcgaggtggatgcactcaaagggactaacgagtctctggaacgccagatgcgtgaaatggaagagaacttctctgtggaagctgctaactaccaagacactattggccgcctgcaggatgagattcagaacatgaaggaagagatggctcgtcacctgcgcgaataccaagacctgctgaatgtcaagatggcgctcgacatcgagatcgccacctacaggaagctgctggaaggagaggagagcaggatttctctgcctcttccaaacttttcttccctgaacctgagggaaaccaatttggattcacttcctctggttgacacccactcaaaaaggacacttctgattaagacggtggaaaccagagatggacaggttatcaacgaaacttcccagcatcacgatgatctggaataaaaactgcacatacttcgtgcagcaaaatactaccagcaagaaggaaaaaaaatccatatcttaaagaaacagctttcaagtgcctttctgcagttttttcaggagcgcaagatagatttggaataggaataagccctagttcttgaaccaacacccataaaagatttagaaaaaagtttacaacataatctagtttactgaagacgccttgtgctagaatactttttaaaaagtatttttgaataccattaaaactgcttttttccatcaagtatctgaccaacttgtttctgcttcaataaatctttggaaaattc

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