LOCUS       XM_069211546            1780 bp    mRNA    linear   VRT 16-OCT-2024
DEFINITION  PREDICTED: Pleurodeles waltl vimentin (VIM), mRNA.
ACCESSION   XM_069211546
VERSION     XM_069211546.1
DBLINK      BioProject: PRJNA1152622
KEYWORDS    RefSeq.
SOURCE      Pleurodeles waltl (Iberian ribbed newt)
  ORGANISM  Pleurodeles waltl
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Caudata; Salamandroidea; Salamandridae;
            Pleurodelinae; Pleurodeles.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_090449) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_031143425.1-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/29/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1780
                     /organism="Pleurodeles waltl"
                     /mol_type="mRNA"
                     /isolate="20211129_DDA"
                     /db_xref="taxon:8319"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="liver"
                     /dev_stage="adult"
                     /collected_by="Andras Simon - KI, Uppsala, Sweden"
     gene            1..1780
                     /gene="VIM"
                     /note="vimentin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 5 long SRA reads, 12
                     Proteins"
                     /db_xref="GeneID:138261954"
     CDS             73..1473
                     /gene="VIM"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="XP_069067647.1"
                     /db_xref="GeneID:138261954"
                     /translation="

MSTTTSRSSYRRMFGGSSGSKPLSSSSGGRYVTASSRYTLGSAIRPSSSRTVFSSSSAPGIYTKSSSVRLRSSMPPARMSDNVDFSLADAINLEFKANRTNEKAEMQELNDRFANFIDKVRFLEQQNKILLAELDQLKGQGKSRVGDLYEEELRELRRQVDQLTNEKSRVEVDRDNMGDDIQRLREKLQDEMMQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIVFLKKLHDEEIRELQSQIQEHHVQIDMDVAKPDLTAALRDVRQQYENVASKNLAEAEEWYKSKFADLSEAANRNNDALRQAKQEANDYRRQLQTLTCEVDALKGTNESLERQMRELEENFGIEASNYQDTITRLQDEIQNMKEEMSRHLREYQELLNVKMALDIEIATYRKLLEGEESRITVPVHSFSAMSMRESNLESRPIDSHSKRTLLIKTVETRDGQVVNERSHEQDELDLE"

     polyA_site      1780
                     /gene="VIM"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

tcgctgctcagccctgcaggagcgcactgaagaggagcacggaggagcagaaaggagaaacttagcggcgacatgagcaccaccacctccaggagttcctaccgcaggatgttcgggggcagcagcggcagcaagccgctctcttcctcctcgggcggccgctatgtcaccgccagcagccgctacaccctgggcagcgccatccgccccagcagcagccgcaccgtcttctccagctcctccgccccgggcatctacaccaagtcgtcttcggtgcggctccgcagcagcatgccaccggcccgcatgagcgacaacgtggacttctccctggccgacgccatcaacctggagttcaaggccaaccgcaccaacgagaaggcggagatgcaggagctgaacgaccgcttcgccaacttcatcgacaaggtgcgcttcctggagcagcagaacaagatcctgctggccgagctggaccagctgaagggccagggcaagtcccgcgtgggcgacctctacgaggaggagctgcgcgagctgcgcaggcaggtggaccagctgaccaacgagaagtcccgcgtggaggtggaccgcgacaacatgggcgacgacatccagcgcctgcgtgaaaagctgcaggatgagatgatgcagcgagaggaggcggagaacaccctgcagtctttcagacaggatgttgacaatgcctcactggcacgcctcgacctggaacgcaaagtagagtccctccaggaagaaatcgtctttttgaagaaactgcacgatgaagaaattcgggaattgcagtcacaaatccaggagcatcacgtccagattgatatggatgtggctaagccagacctgacagctgccctgcgtgatgtccgccaacagtatgaaaatgtggcatccaaaaacctcgctgaggccgaagaatggtacaagtccaagtttgcagatctttctgaagctgcaaatcgcaacaatgatgccctgcgccaagctaaacaggaagcaaatgattaccgcaggcagctacagaccctgacctgtgaagtggatgctctgaaaggaacgaatgagtctctggagcgccagatgcgtgagctggaagagaactttggcatcgaagcttctaactaccaagacactatcacccgccttcaggatgagatccagaacatgaaggaagaaatgtcgcgacacttgcgcgagtaccaggagctgctgaacgtcaagatggccctagatatcgagattgcgacgtacaggaaactgttggagggggaggagagcaggattacagtgcctgtccactccttctctgccatgagcatgagagaatctaaccttgaatcacgcccaattgactcccactcgaagaggacacttctgattaagactgttgagaccagagatggacaggttgttaatgaacgttctcacgagcaggatgaattagatctggagtgaaaagttacagcagtgaagcccagcatgtatttccattaaagcagaaaagacaaccttcaccagcaagacgaagctgtccgcagtgttcaagatgaagacaagcttgcaagtgccttttgcagttaattcaagagcgcaagatagtatgatagtacttaggtctggcgagcagaggcctcttctgaaagatagaaaatgagtttacaacagtgtctagtttacagaaactgcaatagcaatatcttgtgccgcaatactgttttttttttaagtccccgacttccaataaagagctttttccatacag

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