LOCUS       XM_068235556            1928 bp    mRNA    linear   VRT 10-SEP-2024
DEFINITION  PREDICTED: Hyperolius riggenbachi vimentin (VIM), mRNA.
ACCESSION   XM_068235556
VERSION     XM_068235556.1
DBLINK      BioProject: PRJNA1153528
KEYWORDS    RefSeq.
SOURCE      Hyperolius riggenbachi (Riggenbach's reed frog)
  ORGANISM  Hyperolius riggenbachi
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Neobatrachia; Microhyloidea;
            Hyperoliidae; Hyperolius.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_090650) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_040937935.1-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/28/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1928
                     /organism="Hyperolius riggenbachi"
                     /mol_type="mRNA"
                     /isolate="aHypRig1"
                     /db_xref="taxon:752182"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="blood, heart, liver, eyes, gonads, brain,
                     heart, muscle, whole body"
                     /dev_stage="adult"
                     /geo_loc_name="USA: San Francisco, California"
                     /lat_lon="37.770050 N 122.466362 W"
                     /collection_date="2020-09-11"
     gene            1..1928
                     /gene="VIM"
                     /note="vimentin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 10 Proteins"
                     /db_xref="GeneID:137518153"
     CDS             114..1493
                     /gene="VIM"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="XP_068091657.1"
                     /db_xref="GeneID:137518153"
                     /translation="

MSVKSSSYKRLFGGNPRSSTSSNRYATSSSRYSLGSALRPGSGGGLTSRTVYTTSSSPSIYKSSSVRLRSSLPPARMQDSVDFSLADAINLEFKANRTNEKAEMQELNDRFANFIDKVRFLEQQNKILLAELEQLKGKGTSRVGDLYEEEMRDLRRQVDQLTNEKARVEVDRDNMADDLQRLREKLQDEMIQKEEAEGNLQSFRQDVDNASLARIDLERKMESLQEEIIFLKKLHDEEIRELQAQIQEQHIQIDVDSSKPDLTAALRDVRQQYEVVAAKNLQDAEEWYKSKFADLSEAANRNNEALRQAKQEANDYRRQIQALTCEVDSMKGSNDSYDRQMREMEDNFALEAANYQDTINRLQEEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRITIPVSTFSTMSLRETNLESRPPETHTKRSLLIKTVETRDGQVINESSDYQE"

     polyA_site      1928
                     /gene="VIM"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

actcctctcctgctgctgcactgtctgctctggaaggaggaccgctgcagccttgtacttgagtctacatctcgacttcccaccaggattaacttcagcaacttttcaccaagatgtctgtgaagtcctcatcctacaagaggctgttcgggggcaaccccaggtccagcacctccagcaaccgctatgccacctccagcagcaggtactccctgggcagtgccctgcgcccgggctctggcggtggactgaccagcaggacagtctacaccacatcttcctccccatccatctacaagtcctcctcagtccggctgaggagcagcctccccccagccaggatgcaggactcagtggacttctccctggccgatgccatcaacttggagttcaaagccaacaggaccaacgagaaggctgagatgcaggagctcaatgacaggttcgccaacttcatcgacaaggtccgcttcctggagcagcagaacaagatccttctggccgagctggagcagctgaagggtaaaggtacctctagggttggggacctctacgaggaggagatgagggaccttcgcagacaagtggaccagctcaccaacgagaaagccagggtggaagtggacagagacaacatggctgatgatctccagaggctcagagaaaagctgcaagatgaaatgattcagaaagaagaggcggaaggcaacctgcagtcattcagacaggatgtggacaatgcatctttggcacgtattgacctggaacgtaaaatggagtccctgcaggaggagatcatcttcctgaagaaattacacgatgaggaaatccgtgagctgcaggctcagatccaggagcagcacatccagatagacgtggactcctccaagcctgacctcaccgcagccctgcgcgacgtccgccagcagtacgaggtggtcgctgccaagaacctgcaggatgcagaggagtggtacaagtccaagttcgctgatctgtctgaagctgccaaccgaaacaatgaagccttgcgccaggccaaacaggaggccaatgactaccgccgccagatccaagccctcacctgcgaggtggactccatgaaaggatctaacgactcttacgatcgccagatgcgtgagatggaagacaacttcgcccttgaagctgctaactaccaggacactatcaaccgcctccaggaagagatccagaacatgaaggaggagatggctcgtcacttgcgcgagtaccaggatctgctcaacgtcaagatggctcttgacattgagatcgccacctacaggaagctgctggaaggagaagaaagcagaatcaccattccagtttccaccttttccaccatgagcttgagagaaacaaaccttgaatcccgcccaccagagacccataccaaaagatcacttctgatcaagactgtggagaccagagatggacaggtcatcaatgaaagctctgactaccaggagtgaagaccttccctttgaactttgaaaacatcgaccaacaacatatccttgtccctctgtttaaatcttgaagaaaaccagctttcaagtgcctttttttcgctgataataattgaagagcaggagatagacattttgtagtgcagaggtagcggactgccagctctccagccgtggcggaacttcctgttcccagcatgcctctggctggtagtgcattctgggacttggcgtttcaccacagctggaaagcctcgggccttcttagcgccgctggagagatttccctgtggcggagtccctattgaacgacagtggtctagtttactgatgacgtaaaagcaatatcttgtgccgcaatactgtttttaaagtcccaagaaaagctttttacttccaagcagcctgtcagtgcttcaataaatctttagaaataaa

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