LOCUS       XM_067614006            1370 bp    mRNA    linear   VRT 22-AUG-2024
DEFINITION  PREDICTED: Thunnus thynnus Meis homeobox 2a (meis2a), transcript
            variant X16, mRNA.
ACCESSION   XM_067614006
VERSION     XM_067614006.1
DBLINK      BioProject: PRJNA1130912
KEYWORDS    RefSeq.
SOURCE      Thunnus thynnus (Atlantic bluefin tuna)
  ORGANISM  Thunnus thynnus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Pelagiaria; Scombriformes; Scombridae; Thunnus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_089532) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_963924715.1-RS_2024_07
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 07/03/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1370
                     /organism="Thunnus thynnus"
                     /mol_type="mRNA"
                     /db_xref="taxon:8237"
                     /chromosome="16"
     gene            1..1370
                     /gene="meis2a"
                     /note="Meis homeobox 2a; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 7
                     Proteins"
                     /db_xref="GeneID:137199604"
     CDS             28..1188
                     /gene="meis2a"
                     /codon_start=1
                     /product="homeobox protein Meis2a isoform X13"
                     /protein_id="XP_067470107.1"
                     /db_xref="GeneID:137199604"
                     /translation="

MDGVPASMYGDPHGPRPLPQVHHLNHGPPLHASQHYGAHAPHPNVMPTSMGSAVNDVLKRDKDQIYGHPLFPLLALVFEKCELATCTPREPGVAGGDVCSSDSFNEDIAVFAKQVRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGKMPIDLVIDERDGSSKSDHEELSGSSTNLADHNPASWRDHDDATSTHSAGTPGPSSGGHASQSGDNSSEQGDGLDNSVASPGTGDDDDPDKDKKRQKKRGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAGFLLDPSVSQGAAYSPEGQPMGSFVLDGQQHMGIRPAGPMSGMGMNMGMDGQWHYM"

     misc_feature    310..564
                     /gene="meis2a"
                     /note="N-terminal of Homeobox Meis and PKNOX1; Region:
                     Meis_PKNOX_N; pfam16493"
                     /db_xref="CDD:465140"
     misc_feature    order(826..828,955..957,964..969,976..978)
                     /gene="meis2a"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    865..981
                     /gene="meis2a"
                     /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920"
                     /db_xref="CDD:428673"
ORIGIN      

tacgatgagctggcccattacggtgggatggacggagtcccggcgtcgatgtacggggacccgcatggtccccggccgcttccccaggtccaccacctgaaccacggaccgccgctgcacgccagccagcactacggagcacacgctcctcacccaaacgttatgcccaccagtatgggctctgctgtcaacgacgttttaaagagggataaagatcaaatttatggtcaccctttattcccactgctcgcactggtttttgagaagtgcgagttggcgacgtgtactccgagggagcccggcgtagcaggcggcgatgtctgctcctcagactccttcaatgaggacattgcagtctttgccaaacaggtccgagcagaaaaacctttattttcatcaaatccagagttggacaatttgatgatacaagccatacaagtattacggtttcacctcttggaattagaaaaggtgcatgagctctgcgacaatttttgccaccggtacatcagttgtttgaaaggaaaaatgccaatagatctagttattgacgaacgggatggcagctcaaaatcagaccacgaagaactctcgggatcgtcgactaaccttgcagatcataacccagcttcctggagagaccatgatgacgccacttccacacactcagccggcacaccggggccctccagcgggggacacgcttcacagagcggtgacaacagcagtgaacaaggagatggcttagacaacagtgttgcatcgcctggcacaggggacgatgatgatccagacaaggataagaagaggcagaaaaagcgtggcattttccccaaggtggccactaacatcatgagggcgtggctgttccagcatctcacgcacccatacccttctgaagagcagaagaagcagctagcccaagatacaggcctaaccatcttacaagtaaacaactggttcattaacgccaggagaagaatagtacagcccatgattgaccagtcaaatcgagcaggttttcttcttgatccttcagtgagccaaggagcagcgtacagtccagagggccagccaatgggcagctttgtgctggatggtcagcaacacatggggatccgaccagctgggcctatgagtggaatggggatgaatatgggcatggatgggcaatggcactacatgtaacctccaacttgtaaagcaaaacgcaaagaaaaagggggaagtctgccaggcatgccaggggaatacgtacctcagagcggtcctatgggcatgagcatggccccaactacttacaccaaccctcatcagatgacctctcatccttcccatctccgacacggaccccctctccacgcgtacct

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