LOCUS       XM_067455123            3726 bp    mRNA    linear   VRT 19-AUG-2024
DEFINITION  PREDICTED: Pseudorasbora parva NRDE-2, necessary for RNA
            interference, domain containing (nrde2), mRNA.
ACCESSION   XM_067455123
VERSION     XM_067455123.1
DBLINK      BioProject: PRJNA1148495
KEYWORDS    RefSeq.
SOURCE      Pseudorasbora parva (stone moroko)
  ORGANISM  Pseudorasbora parva
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Gobionidae; Sarcocheilichthyinae; Pseudorasbora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_090181) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_024679245.1-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/16/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3726
                     /organism="Pseudorasbora parva"
                     /mol_type="mRNA"
                     /isolate="DD20220531a"
                     /db_xref="taxon:51549"
                     /chromosome="10"
                     /tissue_type="liver"
     gene            1..3726
                     /gene="nrde2"
                     /note="NRDE-2, necessary for RNA interference, domain
                     containing; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins"
                     /db_xref="GeneID:137091034"
     CDS             69..3533
                     /gene="nrde2"
                     /codon_start=1
                     /product="nuclear exosome regulator NRDE2"
                     /protein_id="XP_067311224.1"
                     /db_xref="GeneID:137091034"
                     /translation="

MALFPSFAGLSGNNSSAKDKAPADLEWLSNQSFNTEDALKTHQRAADRVQAEEPAGTSEQKRKESEDSHGRSKKKKKKKKNKHKKRSRDNSESSGSESDTVYPSDLLKKDSTDREEAQVRVSETFMWLDDLQTPTVSPFCIDRRADSANWEYKSLYRGDIARYRRKGASCLGLDFRMQAVNWADRGPEKKRAVKNPDRYFCRSTLKLLLSDSLPALPVLSEGNSANSDSYIKLPACPEVQGSSTQAPVSWVNPLGIYDPGTSLWLEGKGQPEVKGDKQGVQVQGSSSTLLSARVEEFNRKLRENPTDIQMWLDFVHFQDEMAFGSGSFFAANESDGDSDMRKMSLRAVLEKKLSIVDRAVESNPANVDLKLEKLRLCKELMEPAVLQKEWKKLVFVHPNSASLWRKYLLFTQSHFSTFSVSKVNSVFGKCLSTLSAVQDGSMVSHPPLPGTQEDLLDIFLQQCHFLRQAGHTEKAVCLFQALLDFTFFKPDSVKDLPTRQQVEFFEPFWDSGEPRIGERGARGWNAWMLQQERGGWVIPPEPDDDDEEEQEDSEIKDKTRPKWNIWLDVETSREANQWLPWRPDKTKGQSEEDCEDPDRQVLFDDIGPSVIRVDRPDLQLQLILSFLQFLGLPGLSGRFSKTSSSNTLLDDLTFLEEGPDQERPLTSYDLPMAGICAVGHMTFLNDCRRQAGLCKAGEEFLQNVLQQTLPLVSARDQATITLCWLQYEKLKVLRCLRSGNKRQLKSQGKRSKRLAKRLLKEPDNRGSLALWREYAHLEWLLGNLEEARKVFDTSLGMGVSRGLNDPVLCNLCLLYAQLEVEQALSGGTVSTSSKAVYILTKLAEGADYTSFSGQTNPVAILKARKAYEQALLSVLSEQSTGSIAGSSKKLHRTSSLVGCFGLFQYLTMGIDAADAVYSHAIQKLIPSNLNSEVSDGSLRRSKVFTDWESVAVQHVALLRHHTNTNVCPLSRLRQALTDAISLLPSSASLWHLYLQTENRYHSAGRARRFFHSVAKKTDTIVPYLFAITAERRLKQLLDSVQRSHLPGEALPSLPVNGLSNRIRCLFETATATEHGAHCPLLWRMYLNFMVCDGNAERGIGIFYKALQEVPWVKGLYMDAVQLFPERMQEFLDLMTEKELRLRVPMEEVDILLED"

     misc_feature    480..770
                     /gene="nrde2"
                     /note="MTR4-interacting domain (MID) found in nuclear
                     exosome regulator NRDE2 and similar proteins; Region:
                     NRDE2_MID; cd22200"
                     /db_xref="CDD:412062"
     misc_feature    order(480..506,513..518,528..533,537..539,543..587,
                     594..602,606..614,636..644,654..659,663..668,675..695,
                     714..725,744..770)
                     /gene="nrde2"
                     /note="MTR4 binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:412062"
     misc_feature    954..1961
                     /gene="nrde2"
                     /note="necessary for RNA interference; Region: NRDE-2;
                     pfam08424"
                     /db_xref="CDD:462472"
     polyA_site      3726
                     /gene="nrde2"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

gctttcctgctcggtcgcagtccgatgacgtaatcggcacgcgtctgttttgatctgaaagaagcaacatggctctgtttccgtccttcgctggactgtcaggcaataacagctctgctaaggataaagctccagcagatctggaatggctgagtaatcagagcttcaacacagaagatgctttgaagactcaccagcgtgccgcagacagagtgcaagcagaggaaccagcaggcacgagtgagcagaagcgcaaagagagtgaagatagccatggcagatcgaagaagaaaaagaaaaaaaagaagaacaaacacaagaagaggagcagagataactctgagagcagtggttctgaatcagacactgtttaccccagcgacctgctaaaaaaggacagcaccgacagagaggaagctcaggttcgggtgagcgagacctttatgtggctggatgacctccagacccccactgtctcccccttctgtatcgacaggagagctgacagtgccaactgggaatacaaatccctctatagaggagacatagccaggtataggaggaaaggagcctcatgcctaggtttggactttaggatgcaggctgtaaactgggccgacagaggcccagagaagaagcgggcggtcaaaaatcctgatcgctatttctgtcgttccacccttaaattgctcctgtcagatagtttgccggctttgcctgtactctctgagggcaattctgccaactctgattcctatatcaagctcccagcctgccctgaagtgcagggctcttccacacaggcacccgtatcatgggtcaatccgctaggcatctatgaccctggaacctctctatggttggagggcaagggtcagccggaggtcaagggagataagcagggtgttcaggttcaaggaagcagcagcactcttctgagcgcacgggtggaggagtttaacaggaagctacgggagaatcctacagacatccagatgtggctggacttcgtacacttccaggatgagatggctttcggttctgggtctttttttgctgccaatgaaagtgacggtgacagtgacatgagaaaaatgtctcttcgtgcagtgctggagaagaagctgtccatagtggacagggcggtggaaagtaaccctgccaacgtggacctgaaactggagaaactccgcttgtgcaaggaactaatggagcctgccgttctgcagaaagagtggaagaaactagtttttgtccatccaaacagtgcctctttatggaggaagtacctcctcttcacacagagtcatttcagcactttctctgtgtcaaaggtcaacagcgtgttcggaaaatgtctgagcacgctcagtgctgtccaggatggcagtatggtgtctcaccctccacttccaggcacacaggaagacctcctggatatctttctacaacagtgccatttcctgcgacaagcaggtcacacagagaaagctgtgtgtctcttccaagcgctgctggacttcactttcttcaagccagacagtgtgaaagatctgcccactagacagcaggtggaattttttgagccattttgggacagtggagagcccaggataggggagcggggggctcggggatggaatgcctggatgcttcagcaggagagaggaggatgggtgatcccacctgagccagatgatgatgatgaagaagagcaggaggactcggagatcaaagacaagaccaggcctaaatggaatatctggttagatgtagagacgtcccgtgaggcaaaccaatggttgccatggaggcctgataaaaccaagggccaatcagaagaggactgcgaggaccccgacaggcaggtcttgtttgatgatatcggcccatctgtgattcgtgtggaccgaccagatctccaactgcagttgatcctgtcattcctgcagttcctaggtctgcccggactttcaggaaggttctccaaaacctcttcctcaaacactctactggatgatctcactttccttgaagagggcccagaccaggagcgacctctgacctcttatgacctcccaatggctgggatctgtgcagtgggtcacatgacatttctgaatgactgcaggaggcaggcagggctgtgtaaggcaggggaggagtttctccagaacgttctacagcaaactctcccgctcgtttctgcacgggatcaagctactattactctctgctggctgcagtacgagaagcttaaggtgctgagatgtttacgcagtggaaataaaaggcaactgaagtctcaggggaagcgtagtaaacgactagccaagcggctgctgaaagagcccgataacaggggcagtctggcactttggagagagtatgcccatttggagtggcttctgggtaaccttgaagaggcacgcaaagtatttgacacttccttgggcatgggtgtgtctagaggtcttaatgaccctgttctctgcaacctctgcttgctctatgcccagttagaggtagagcaggccttaagcggtgggacagtctccacttcctccaaagctgtctacattctcactaaattagctgagggtgctgattacacctctttttctggccagaccaacccagtggccatattgaaggccagaaaggcctatgagcaggccctgttgagcgttttatctgagcagagcacaggtagcattgctggatcttcaaagaaactccataggacatccagcctggttggatgctttggactttttcagtacctgacaatggggatagatgcagctgatgctgtgtacagtcatgccatccaaaaactgattcccagtaacttgaattcagaagtttcagatggatctctgaggagatccaaggtctttacagactgggagtctgttgctgtgcagcatgtggcactactacgccaccacaccaacaccaatgtgtgtcctctatcccggctaagacaggcacttacagatgccatctccttactgccctccagtgcctcattatggcatctctacctgcaaacagagaaccgctatcacagcgcaggccgcgcccgaaggtttttccacagtgtggcaaagaaaactgacactattgtgccctatctattcgccatcactgcagaacgacgactcaaacagctactggactctgtgcagaggtctcatcttcctggggaagctctgcctagcctgccagtgaatggtcttagcaaccgtatccgctgtctgtttgaaactgctacagcaacagaacatggggctcattgtcctctgctgtggagaatgtatctgaacttcatggtatgtgatgggaatgcagagaggggcattggaatcttctacaaggctctacaggaagtgccctgggtaaagggcttgtacatggacgctgtgcagctgtttcctgaacgtatgcaagagtttttagaccttatgactgagaaggagctgcgtctgagagtgcccatggaggaggtggacatcttgctggaggactagccatccaaacccttgcctgaatacacttggaatcagccaacagagactaaataatctatctgaaaaggttaaacaaaactactaaacgattaaaaaaactactaaatgattaaaaaaaactacagattttatttatttttatgcattgttgagtgtatttttccatgagttgggtaataaatgattacatttt

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