LOCUS       XM_067367999            4269 bp    mRNA    linear   VRT 19-AUG-2024
DEFINITION  PREDICTED: Chanodichthys erythropterus NRDE-2, necessary for RNA
            interference, domain containing (nrde2), transcript variant X1,
            mRNA.
ACCESSION   XM_067367999
VERSION     XM_067367999.1
DBLINK      BioProject: PRJNA1148501
KEYWORDS    RefSeq.
SOURCE      Chanodichthys erythropterus (predatory carp)
  ORGANISM  Chanodichthys erythropterus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Xenocyprididae; Xenocypridinae; Chanodichthys.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_090238) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_024489055.1-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/16/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4269
                     /organism="Chanodichthys erythropterus"
                     /mol_type="mRNA"
                     /isolate="Z2021"
                     /isolation_source="lake"
                     /db_xref="taxon:933992"
                     /chromosome="18"
                     /tissue_type="muscle"
                     /geo_loc_name="China: Hulun lake"
     gene            1..4269
                     /gene="nrde2"
                     /note="NRDE-2, necessary for RNA interference, domain
                     containing; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins"
                     /db_xref="GeneID:137006871"
     CDS             214..3660
                     /gene="nrde2"
                     /codon_start=1
                     /product="nuclear exosome regulator NRDE2"
                     /protein_id="XP_067224100.1"
                     /db_xref="GeneID:137006871"
                     /translation="

MALFPSFAALSGSNSSAEDRAPADLEWLSNQSFTEDALKTQRRATERVQAEEPASSGQKRKEREDSHGRSKKSKKKKKKKHKKRSRDNSESSGSESDTVYPSDLLKKDNADREEAQVRVSETFMWLDDLQTPTDSPFCIDRRADRANWEYKSLYRGDIARYKRKGNSCLGLDFRMQAVNWDDSGPEKKRMVKKPERYFCPSTLQRLRSDSLPALPVLSEGSAANSDSYIKLPACTEEQGSSAQAPVSWVNPLGIYDPGTSLWLEGKGQTEVKGDQQDVEFQGSNTTLLSARVEEFNRKLRENPTDIQMWLDFIHFQDELAFGSGSYSVASDSDMRKMSLRAVLEKKLSIVDKAVESNPANVDLKLEKLRLCKELWEPAVLQKEWKKLVFVHPNSAPLWRKYLLFTQSHFSTFSVSKVNSVFGKCLSTLSAVQDGSMVSHPPLPGTQEDLLDIFLQQCHFLRQAGHTEKAVCLFQALLDFTFFKPDSVKDLPTRQQVEFFEPFWDSGEPRIGERGARGWNAWMHQQERGGWVIPPEPDDDDEEEPEDSEIKDKTRPKWKIWLDVEASREANHWLPWRPDKTKGQSDEDCEDPDRQVLFDDIGPSVIRVDGPDLQLQLILSFLQFLGLPGPSGRFSTTSSSNILLDDLTFLEEGPDPERPLTCYDLPVAGICAVGHMTFLGDCRRQAGLCKAGEEFLKNVLQQTLLLVSAKDQAVITLCWLQYEKLKVLRCLRSRNKRQLKSQGKRSKRLAKRLLKEPDNRGSLALWREYAHLEWLLGNLEEARKVFDTALAMGMSRGLNDPVLCNLCFLYAQLEVEQALNGGTVSTSSKAVYILTKLAECAAYTPFSGQINPVAILKARKAYELALSNFLPEQSTGSNSGAPKKLHRTSRLVGCFGLFQYLTMGIDAADAVYSHAIQKLIPNNLNSEVTDVSLRTSKVFAEWESVAMQHVALLRHHTNTNVFPLSRLRLALTDAISLLPSSASLWHLYLQTENRYCSASRARRFFHSVAKKTDSVVPYLFAITAERQLKQQLDSVQRSHLSGEALPTLQLNGLSNRIRCLFETATATEHGAHCPLLWRMYLNFMVCDGNAERGCGIFYKALQDVPWVKGLYMDAVQLFPERVEEFLDLMTEKELRLRVPMEEVDILLED"

     misc_feature    619..909
                     /gene="nrde2"
                     /note="MTR4-interacting domain (MID) found in nuclear
                     exosome regulator NRDE2 and similar proteins; Region:
                     NRDE2_MID; cd22200"
                     /db_xref="CDD:412062"
     misc_feature    order(619..645,652..657,667..672,676..678,682..726,
                     733..741,745..753,775..783,793..798,802..807,814..834,
                     853..864,883..909)
                     /gene="nrde2"
                     /note="MTR4 binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:412062"
     misc_feature    1093..2088
                     /gene="nrde2"
                     /note="necessary for RNA interference; Region: NRDE-2;
                     pfam08424"
                     /db_xref="CDD:462472"
ORIGIN      

gcagcactggaaccggcgggccaacaagcccttcgtttagacaagacagggctgcttaaatttctctcccgggatcagatctcataatatagactcaccgtgagccttctttacatcaaaaaagttaaggtttaattgagttttcctagaaagctgtggtcgcagatggatgacgtaatcggcgcgcgtctgttttgatctgagtgaagcgacatggctctttttccgtccttcgctgcactgtcaggcagtaacagctctgctgaggatagagctccagcagatctggaatggctgagtaatcagagcttcacagaagatgctttgaagactcaaaggcgtgccacagaaagagtgcaagcagaggaaccagcatcaagtgggcagaagcgtaaagagagagaagatagccatggcagatcgaagaagagcaagaaaaaaaagaagaaaaaacacaagaagaggagcagagataactcggagagcagtggttctgaatcagacaccgtttaccccagcgacctgctaaaaaaggacaatgctgacagagaggaagctcaggttcgggtgagcgagacctttatgtggttggatgacctccagacccccactgactcccccttctgtatcgacaggagagctgaccgtgccaactgggaatacaaatccctctatagaggagacatagccaggtataagaggaagggaaactcgtgcctaggtttggactttaggatgcaggctgtaaactgggacgacagtggcccagagaagaagcggatggtcaagaaacctgagcgctatttctgtccttccacccttcagcgtctccgttcagatagtctgccggctttgcccgtactctctgagggcagtgctgccaactctgattcttacatcaagctcccagcctgcactgaagagcagggctcttccgcccaggcacccgtatcatgggtcaatccgcttggcatctatgaccctggaacgtctttatggttggaaggcaagggtcaaacagaggtcaagggagatcagcaggacgttgagtttcaaggaagtaacaccacccttctgagcgcacgagtggaggagtttaacaggaagctacgggagaatcctacagacatccagatgtggctggacttcatacacttccaggatgagctggccttcggttctgggtcttattctgttgccagtgacagtgacatgagaaaaatgtctcttcgtgctgtgctggagaagaagctgtccatagtggacaaggcggtggaaagtaaccctgccaacgtggacctgaaactagagaaactccgcctgtgcaaggaactatgggagcctgccgtcctgcagaaagagtggaagaaactagtgtttgtccatccaaacagtgcccctttatggaggaagtacctcctcttcacacagagtcatttcagcactttctctgtgtcaaaggtcaacagcgtatttggaaagtgtctgagtacgctcagtgcagtccaggatggcagtatggtgtctcaccctccgcttccaggcacacaggaagacctcttggatatctttctacagcagtgccatttcctgcggcaagcaggtcacacagagaaagctgtgtgtctcttccaagccctgctggacttcactttcttcaagccagacagtgtgaaagatctgcccactagacagcaggtggaattttttgagccattttgggacagtggagagcccaggataggggagcggggggctcggggttggaatgcttggatgcatcagcaggagagaggaggatgggtgattccacctgagccagatgatgatgacgaagaagagccggaggactccgagatcaaagacaagaccaggcctaaatggaagatctggttagatgtagaggcgtcccgtgaggcgaatcactggttgccatggagaccagataaaaccaagggccaatcagatgaggactgtgaggatcctgacaggcaggtcttgtttgatgatatcggcccatctgtgattcgtgtggacggaccagatctccagctgcagttgatcctgtcattcctgcagttcctaggtctgcctggaccttcaggaaggttctctacaacctcttcctcaaacattctactggacgatctgaccttccttgaagagggcccagacccggagcgacctctgacctgttatgacctcccagtggctgggatctgtgcagtgggtcacatgacatttctgggggactgcaggaggcaggcagggctgtgtaaagcaggggaggagtttctcaagaacgttctacagcaaactctcctgctcgtttctgcaaaggatcaagctgttattacactctgctggctgcagtatgagaaactcaaggtgctgagatgtttacgcagtagaaataaaaggcaactgaagtctcaggggaagcgtagtaaacgactagctaagcggctgctaaaagagccagataaccggggcagtctggcactttggagagagtatgcccatctggagtggcttctgggtaacctggaagaggcacgcaaagtatttgacactgccttggccatgggcatgtctagaggacttaatgaccctgttctctgcaacctctgctttctctatgcccagttagaggtagagcaggccttaaatggtgggacagtgtccacttcctccaaagctgtctacattctcactaaattagccgagtgtgctgcttacactcctttctctggccagatcaacccagtggccatactaaaggccagaaaggcctatgagctggccctgtcaaactttttacctgagcagagcacaggcagcaattctggagctccaaagaaactccacaggacatccagactagtaggatgctttgggctttttcagtacctgacaatggggatagatgcagctgatgctgtgtacagtcatgccatccaaaaactgattcccaacaacttgaattcagaagtgacagatgtatctctgaggacatccaaggtctttgcagaatgggagtctgttgctatgcagcatgtagcactgctgcgccaccacaccaacaccaacgtgtttcctctctctcggctaagactggcacttacggatgctatctcgttactgccctccagtgcctcgttatggcatctctacctgcaaacagagaatcgctattgcagtgcaagccgtgcccgaaggtttttccacagtgtggcaaagaaaactgacagtgttgtgccgtatctatttgccatcactgcagaacgacaactcaaacagcaacttgactctgtgcagaggtctcatctttctggagaagctctgcccacccttcaattgaatggtcttagcaaccgtatccgctgtctgtttgaaactgctacagcaacagaacatggggcccattgtcctctgctgtggaggatgtatctgaatttcatggtatgtgatgggaatgcagagaggggctgtggaatcttctacaaggctctacaggatgtgccctgggtaaagggcttgtacatggatgctgtgcagctgtttcctgaacgtgtggaagagtttttagaccttatgactgagaaggagttgcgtctgagagtgcccatggaggaggtggacatcttgctggaggactagccatccagacctttcccataatactcaggagatcagaaacctctgaccaccaaccaagagaaacgaatctctctgaaaaagagctaaacaaaagatattaaaaaaaaaaaaaaaacatattttatttatttttatgtattgttgaatgtatttttccatgatttggggaataaatgattacattttaagctttctgacttcttttaaattgaatgtttgtgagagtttatcatggtttgtttgtagtgtttcagttagctgagtgacctggggcctgtaccatgatggtatttgaacaaactcagggttacaggattagtttcgagttgacaaatccaaaccaattcagtcaggttttgttagtaccatgcgatctatgatctatttgatcatcagcttcctctgtcaacctgggctttgatcctgagttaaggttaaacatcagtagcgaacatcccatcacatgctgtggaacagtgaaactgcgattcagttctcttctgaagaatattaagagattgaaaaatattaagaatttaaacaaatttacaccgcaagaagaaaagagctgtctatgaaagaggacaactaaaaaatcttgctatatca

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