2024-11-21 22:07:39, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_066084865 2871 bp mRNA linear INV 28-JUN-2024 DEFINITION PREDICTED: Magallana gigas protein argonaute-2 (LOC105329532), transcript variant X6, mRNA. ACCESSION XM_066084865 VERSION XM_066084865.1 DBLINK BioProject: PRJNA1118722 KEYWORDS RefSeq. SOURCE Magallana gigas (Pacific oyster) ORGANISM Magallana gigas Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae; Magallana. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_088857) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963853765.1-RS_2024_06 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 06/20/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2871 /organism="Magallana gigas" /mol_type="mRNA" /db_xref="taxon:29159" /chromosome="5" gene 1..2871 /gene="LOC105329532" /note="protein argonaute-2; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:105329532" CDS 139..2871 /gene="LOC105329532" /codon_start=1 /product="protein argonaute-2 isoform X6" /protein_id="XP_065940937.1" /db_xref="GeneID:105329532" /translation="
MFPIAPGITSILHNQQLNGGQTPFSPFPAMQEGQSSIPFSTFPTEGQSSGLPFTSFPTDGQTSIPFSVFPPVQPPEGGFAFPPPQPPPGPPSGPPKPPGPPGPPKPSDFICPPRPNYGTEGKPILLRANHFQVRIPKGVLHHYDISIVPDKCPRRVNREIIETMVTAYSQKIFSGQKPVFDGRKNLYSREPLPIGREKVELEVTLPGEGKDRVFNITMKWVQQISLFGLEEALQGHTREIPQDAITAVDIIMRHLPSMTYTPVGRSFFSPPEGYDHPLGGGREVWFGFHQSVRPSHWKMMLNIDVSATAFYKAQPVIEFMCEVLDIKDVNEQKRPLTDSQRVKFTKEIRGLKVEITHCGTMRRKYRVCNVTRRPAQTQSFPLQLDSGQTVECTVARYFLERYKMKLQYPHLPCLQVGQEQKHTYLPLEVCNVVGGQRCIKKLTDMQTSTMIKATARSAPDREREINNLVRKANFNADPFLQTFGININPMMCDLQGRVLHPPKILYGGRTKAQAVPNQGVWDMRGKQFYSGTEIRVWAIACFAPQRTVREDALRNFTQQLQRISNDAGMPILGQPCFCKYATGPDQVEPMFRYLKNTYQGLQLIVVVLPGKTPVYAEVKRVGDILFGLATQCVQAKNVNKTTPQTLSNLCLKINVKLGGINNILLPSIRPSIFREPVIFLGADVTHPPAGDASKPSIAAVVGSMDAHPSRYSSTVRVQQHRQEIIQELSSMVRELLIHFYKATRFKPTRIIFYRDGVSEGQFQQVLQHELRAVREACMKLELGYQPGITFIVVQKRHHTRLFCADRKDQIGRSGNIPAGTTVDVGITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFNADELQTLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVEKEHDR"
misc_feature 502..894 /gene="LOC105329532" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 922..1074 /gene="LOC105329532" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 1075..1437 /gene="LOC105329532" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1231..1233,1276..1278,1318..1320,1330..1332, 1384..1386,1405..1407,1411..1413) /gene="LOC105329532" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1570..2847 /gene="LOC105329532" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1981..1983,1993..1995,2029..2040,2047..2049, 2071..2073,2080..2082,2092..2094,2104..2106) /gene="LOC105329532" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2185..2187,2191..2193,2401..2403,2815..2817) /gene="LOC105329532" /note="active site" /db_xref="CDD:240015" ORIGIN
gcgtcgcgtcgcgattgaagcgccctctttggctctagtcatagttgtgaacattgctcaaaattacaaagtcaaagtgaatttacgaagcctttgagggcacaatttacagataatctgtaaacatataatgccaatatgtttccgatagcgccaggtatcacaagcatactgcacaaccagcagcttaacggtggacagacccccttctcacctttccctgctatgcaggaaggtcagtcgtccattccattctcaacatttccaacagaaggtcaatcttcaggcctgccgttcacatctttcccaacagatggccagacttcgattccgttttcggtattcccacccgttcagccaccggagggaggatttgccttcccccctcctcagcccccacctggcccgccttcaggaccacccaagccaccaggacctcctggtcctcccaaaccatcggactttatatgtccgccccgtcccaactacgggacggagggcaaaccaatcctactgcgtgccaatcatttccaagtgcgtattcccaagggagttcttcaccactacgatatttcaatagtgcctgacaaatgtccacgaagagtcaacagggagattattgagacaatggtaactgcttatagccagaaaatcttctcagggcagaaaccggtgtttgatggacgcaaaaacctctacagtcgcgagcctcttcccattggtcgagaaaaggtggagctggaagttactctcccgggggagggcaaggaccgcgtctttaacataacaatgaaatgggtccagcagatcagcctgtttgggctggaggaagcactgcagggccacacccgggagattccccaggacgcaatcaccgccgtcgatattatcatgcgtcacttgccaagtatgacatacactcctgtgggacgttcattcttctccccaccggaggggtacgaccaccccctgggagggggcagggaggtgtggttcggcttccatcagagtgtgaggccctcccactggaaaatgatgctcaacattgacgtatctgccactgccttttacaaagcgcagcctgtgatagagttcatgtgtgaagtgttggatatcaaagacgtcaacgaacagaaacgccccctcaccgattctcagagggtcaaatttacaaaggaaatcagaggactcaaggtagagatcactcactgtggaaccatgagacgtaaatatcgcgtgtgtaacgtgactcgacgacccgcccagacacagtcgtttcccctgcagctggactcgggacagaccgtggagtgtaccgtggcccgctacttcctggagcgatacaaaatgaagctacaataccctcacttgccatgcttacaagtcggccaggaacagaagcacacctatcttcctctggaggtgtgtaacgtggtgggcggccagaggtgtatcaagaagctgaccgacatgcagacgtccaccatgatcaaggccacagcccgatctgccccggacagagagagagaaatcaacaaccttgtgaggaaagccaacttcaacgctgatccatttctacaaacatttggaataaacatcaacccaatgatgtgtgacctccagggcagagttcttcatcctcccaaaatcctgtatggaggaaggaccaaagcccaggcagtgccaaaccaaggtgtctgggacatgaggggcaagcagttctactcggggacggagatcagggtgtgggccatcgcttgtttcgccccccagaggacggtcagggaggacgctctcagaaacttcacccagcagctacaaaggatctcgaacgacgctgggatgcccattctaggccagccttgtttctgtaaatacgccacaggccccgatcaggtggagcccatgttccgatatctcaagaacacttaccaaggcctccagctcatcgtcgttgtactgccgggaaaaacgcccgtatatgctgaggtgaagcgtgtgggtgacattttatttggattagccacacaatgtgttcaagccaaaaacgtgaacaaaacaaccccccagaccctgtccaatctctgcctcaagatcaacgtcaagctgggcggtatcaacaacatccttctgccaagtattcgtccctccatatttagagagcccgtcatattcctgggtgccgatgtgactcatccccccgcaggagatgccagtaaaccatccatagctgcagtggtaggcagcatggacgcccaccccagccgctactcctccacggtccgagtccagcagcacagacaggaaatcatacaggagttgtcttccatggtgcgggaactcctgatccacttctacaaggcgacgcgattcaagccgacgcgcatcatcttctacagagacggcgtcagtgagggacagttccagcaggtgttacagcacgagctgcgtgctgtgagagaggcctgcatgaagcttgagcttggataccagcccggtatcacctttatcgtggtccagaagagacaccacacccgactgttctgtgccgaccgcaaggaccagataggacgaagcggaaatatcccggccggaaccaccgtggatgtcggaatcacccaccccacagagtttgatttttacctgtgtagtcatgctggtatacagggcaccagtcgcccctctcactaccacgtcctgtgggacgacaaccggttcaacgcggacgagctccagacgctgacctaccagctgtgtcacacctatgtccgctgtacccgcagtgtctccatccccgcccctgcttactatgcacatctagtcgccttccgggcccgctaccacctggtggagaaagagcacgacaggtaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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