2024-10-04 20:31:10, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_062999847 1182 bp mRNA linear VRT 10-FEB-2024 DEFINITION PREDICTED: Trichomycterus rosablanca vimentin-related 2 (vimr2), mRNA. ACCESSION XM_062999847 VERSION XM_062999847.1 DBLINK BioProject: PRJNA1074370 KEYWORDS RefSeq. SOURCE Trichomycterus rosablanca ORGANISM Trichomycterus rosablanca Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Trichomycteridae; Trichomycterus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_085995) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030014385.1-RS_2024_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/08/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1182 /organism="Trichomycterus rosablanca" /mol_type="mRNA" /isolate="fTriRos1" /db_xref="taxon:2290929" /chromosome="8" /sex="male" /tissue_type="heart, liver, muscle" /dev_stage="adult" /geo_loc_name="Colombia: Andes Mountains, Santander" /lat_lon="6 N 73 W" /collection_date="2021-06-26" /collected_by="Mauricio Torres" gene 1..1182 /gene="vimr2" /note="vimentin-related 2; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:134318900" CDS 1..1170 /gene="vimr2" /codon_start=1 /product="glial fibrillary acidic protein" /protein_id="XP_062855917.1" /db_xref="GeneID:134318900" /translation="
MAMLRVSSYRRLLEQKQQRPATWFSQRCGTQILPSATRGGVSMIECPEPDFAAARALNREAVRRFAQERSMMVGLNDRLAVLIDMERCLEEENESLEAQIIEMEKRLAAKPSSFTALGRGFPSDSSLEAVVEKLRREKEEILCDINNLKKDLQHKQKKYDEAVEQRTLLQLEREDVAVEVDAVTADCLALREQVAVYEAQLAEMEQQHELRIESLSEAAAEDKHVSTVSLKFPCIDMNPAITVIKEYYCQLAESLQFDSAVAAVSRRDVIGRPGEKTSRGKVKADSEVMDVKALKELIAELRRELAEKEKCKEELETEIQSKSEDHLLEIEELETCICRLEEEEADLQAQMKEQIADHDELLNEKMALDIEIAAYRTLVEKEEDRICNL"
ORIGIN
atggcaatgctgagagtgtcatcgtaccggagacttctcgaacagaagcagcaaagaccagctacatggttcagccagcgctgtggaacccagatccttccctccgctaccaggggtggagtttccatgatcgaatgccctgagccggattttgctgccgctcgagctctgaacagagaggctgtgaggcgttttgctcaagaacgctccatgatggtcgggctaaacgatcgcctggctgtccttatcgacatggaacgatgtctggaggaggaaaacgagtctcttgaggctcagatcattgaaatggagaagagactggctgccaaaccaagttcgttcactgctctcggtcgcggcttcccctcagactccagtttggaggccgtggttgaaaaactgcgcagagagaaggaggagattttatgtgacataaataatctgaaaaaagacttgcagcataaacaaaagaagtatgatgaggctgtggagcagaggactcttcttcagctggagcgtgaggatgtcgccgtggaggtggatgccgtgacagctgattgcctggcactcagagaacaagtcgccgtatacgaggcgcagctggctgaaatggagcagcaacatgagctgaggatcgagagtctgtctgaggcggcggctgaagataagcatgtttcaaccgtgtctcttaaatttccctgcatcgacatgaatccagccatcaccgttatcaaggaatactactgccagctggctgagagcctacagtttgattccgcggtcgctgcggtttccagacgagacgtaataggtagaccgggggagaaaacatccagagggaaagtgaaggctgattctgaggtgatggacgtgaaggctctgaaggagctgattgctgagctccggcgggagctagctgagaaggagaagtgtaaagaagaactggaaacagagattcaatccaaaagtgaggatcatctactggagattgaggaactggagacctgcatttgccggctggaggaagaggaagctgacttacaggcccagatgaaggaacaaatagcagaccacgatgagctgctcaatgaaaagatggcactggacatagaaattgctgcttacaggaccttggtggagaaggaggaagaccgaatttgcaacctgtaaaaagaccggacg
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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