LOCUS       XM_062569059            1783 bp    mRNA    linear   VRT 29-JAN-2024
DEFINITION  PREDICTED: Rhea pennata vimentin (VIM), mRNA.
ACCESSION   XM_062569059
VERSION     XM_062569059.1
DBLINK      BioProject: PRJNA1054191
KEYWORDS    RefSeq.
SOURCE      Rhea pennata
  ORGANISM  Rhea pennata
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Palaeognathae; Rheiformes; Rheidae; Rhea.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_084664) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_028389875.1-RS_2023_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/20/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1783
                     /organism="Rhea pennata"
                     /mol_type="mRNA"
                     /isolate="bPtePen1"
                     /specimen_voucher="899214"
                     /db_xref="taxon:8795"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="heart muscle"
                     /dev_stage="unkown"
                     /geo_loc_name="USA: San Diego Zoo"
                     /lat_lon="32.73547391 N 117.14903527 W"
                     /collection_date="2012-12-14"
                     /collected_by="San Diego Zoo"
     gene            1..1783
                     /gene="VIM"
                     /note="vimentin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 42 Proteins"
                     /db_xref="GeneID:134136847"
     CDS             80..1459
                     /gene="VIM"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="XP_062425043.1"
                     /db_xref="GeneID:134136847"
                     /translation="

MSITTKNSSYRRMFGGGSRPSTGTRYITSSTRYSLGSALRPSSARYVSASPGGMYATKATSVRLRSSMPPMRLHDAVDFSLADAINTEFKANRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGKGTSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLADDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIVFLKKLHDEEIRELQAQLQEQHIQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQEANEYRRQIQSLTCEVDALKGSNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRINMPIPTFASLNLRETNIESQPMVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"

     polyA_site      1783
                     /gene="VIM"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

gccgctcttcttcgctcgccgcctgcagccgcgtagccctgctccgctcccggattacaaagcccgcgccgccgtcgccatgagcatcaccaccaagaactcctcgtaccgccggatgttcggcgggggcagccgccccagcaccggcacccgctacatcacctccagcacccgctactcgctgggcagcgccctgcgccccagcagcgcccgctacgtgtccgcctcgcccggcggcatgtatgccacgaaggcgacgtcggtgcggctgcggagcagcatgccgcccatgcggctccacgacgcggtggacttctcgctggcggacgcaatcaacacggagttcaaggcgaaccgcaccaacgagaaggtggagctgcaggagctcaacgaccgcttcgccaactacattgacaaggtgcgcttcctggagcagcagaacaagatcctgctggccgagctggagcagctcaagggcaagggcacgtcccgcctgggcgacctctacgaggaggagatgcgggagctgcgccggcaggtcgaccagctcaccaacgacaaggcccgggtggaggtggagcgggacaacctcgccgacgacatcatgcggctgcgggagaagttgcaggaggagatgctgcagcgggaggaggccgagaacaccctgcagtccttccgacaggatgttgacaatgcctccttggcccgtcttgatcttgagcgcaaagttgagtccctgcaagaggagattgtgttcttgaagaagcttcatgatgaggaaatccgagaactgcaggcccaacttcaggaacagcacattcaaattgatatggatgtttctaagcctgatcttactgctgccctgcgtgacgttcgccaacagtatgaaagcgttgctgctaagaatcttcaggaagctgaagaatggtacaagtccaaatttgcagatctctctgaagctgctaataggaacaacgatgccctgcgccaggccaaacaagaagctaatgaataccgcagacagattcaatctctcacctgcgaagttgatgctcttaaaggaagtaatgaatctctggagcgccaaatgcgtgaaatggaggagaattttgctgttgaagctgctaactaccaagacactattggccgtctgcaggatgagattcaaaacatgaaggaagaaatggctcgccatcttcgtgaataccaggacctgctgaatgtaaagatggctcttgatattgagattgccacctacagaaaactgctggagggagaagagagcaggattaatatgcctattccaacctttgcttctctgaacctgagagaaaccaacattgagtctcagccaatggttgacactcactcaaagaggacacttctaattaagaccgtcgaaactagagatggacaggttattaatgaaacttcccagcatcatgatgacttggagtaaaaatgaagtgatgatgaatgaataatgccagagaacttcttaccagcaagatttaaaaagtccatgtctttaaggaagaaacagctttcaagtgcctttctgcagtttttccatgagcgcaagattattatgctaggaaataggtcttagatcttgcaaactgactctccctgaaggattagagtttacaatggagtctagtttacaaatagcaatatcttgtgctgcaatactgtttttaagtatctgaatccaataaaactgctttttccagcacagtatgagcaacctctcgctacttcaaataaatctttggaaaatggc

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