2024-10-04 21:37:36, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_062569059 1783 bp mRNA linear VRT 29-JAN-2024 DEFINITION PREDICTED: Rhea pennata vimentin (VIM), mRNA. ACCESSION XM_062569059 VERSION XM_062569059.1 DBLINK BioProject: PRJNA1054191 KEYWORDS RefSeq. SOURCE Rhea pennata ORGANISM Rhea pennata Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Rheiformes; Rheidae; Rhea. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_084664) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_028389875.1-RS_2023_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/20/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1783 /organism="Rhea pennata" /mol_type="mRNA" /isolate="bPtePen1" /specimen_voucher="899214" /db_xref="taxon:8795" /chromosome="2" /sex="male" /tissue_type="heart muscle" /dev_stage="unkown" /geo_loc_name="USA: San Diego Zoo" /lat_lon="32.73547391 N 117.14903527 W" /collection_date="2012-12-14" /collected_by="San Diego Zoo" gene 1..1783 /gene="VIM" /note="vimentin; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 42 Proteins" /db_xref="GeneID:134136847" CDS 80..1459 /gene="VIM" /codon_start=1 /product="vimentin" /protein_id="XP_062425043.1" /db_xref="GeneID:134136847" /translation="
MSITTKNSSYRRMFGGGSRPSTGTRYITSSTRYSLGSALRPSSARYVSASPGGMYATKATSVRLRSSMPPMRLHDAVDFSLADAINTEFKANRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGKGTSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLADDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIVFLKKLHDEEIRELQAQLQEQHIQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQEANEYRRQIQSLTCEVDALKGSNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRINMPIPTFASLNLRETNIESQPMVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"
polyA_site 1783 /gene="VIM" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
gccgctcttcttcgctcgccgcctgcagccgcgtagccctgctccgctcccggattacaaagcccgcgccgccgtcgccatgagcatcaccaccaagaactcctcgtaccgccggatgttcggcgggggcagccgccccagcaccggcacccgctacatcacctccagcacccgctactcgctgggcagcgccctgcgccccagcagcgcccgctacgtgtccgcctcgcccggcggcatgtatgccacgaaggcgacgtcggtgcggctgcggagcagcatgccgcccatgcggctccacgacgcggtggacttctcgctggcggacgcaatcaacacggagttcaaggcgaaccgcaccaacgagaaggtggagctgcaggagctcaacgaccgcttcgccaactacattgacaaggtgcgcttcctggagcagcagaacaagatcctgctggccgagctggagcagctcaagggcaagggcacgtcccgcctgggcgacctctacgaggaggagatgcgggagctgcgccggcaggtcgaccagctcaccaacgacaaggcccgggtggaggtggagcgggacaacctcgccgacgacatcatgcggctgcgggagaagttgcaggaggagatgctgcagcgggaggaggccgagaacaccctgcagtccttccgacaggatgttgacaatgcctccttggcccgtcttgatcttgagcgcaaagttgagtccctgcaagaggagattgtgttcttgaagaagcttcatgatgaggaaatccgagaactgcaggcccaacttcaggaacagcacattcaaattgatatggatgtttctaagcctgatcttactgctgccctgcgtgacgttcgccaacagtatgaaagcgttgctgctaagaatcttcaggaagctgaagaatggtacaagtccaaatttgcagatctctctgaagctgctaataggaacaacgatgccctgcgccaggccaaacaagaagctaatgaataccgcagacagattcaatctctcacctgcgaagttgatgctcttaaaggaagtaatgaatctctggagcgccaaatgcgtgaaatggaggagaattttgctgttgaagctgctaactaccaagacactattggccgtctgcaggatgagattcaaaacatgaaggaagaaatggctcgccatcttcgtgaataccaggacctgctgaatgtaaagatggctcttgatattgagattgccacctacagaaaactgctggagggagaagagagcaggattaatatgcctattccaacctttgcttctctgaacctgagagaaaccaacattgagtctcagccaatggttgacactcactcaaagaggacacttctaattaagaccgtcgaaactagagatggacaggttattaatgaaacttcccagcatcatgatgacttggagtaaaaatgaagtgatgatgaatgaataatgccagagaacttcttaccagcaagatttaaaaagtccatgtctttaaggaagaaacagctttcaagtgcctttctgcagtttttccatgagcgcaagattattatgctaggaaataggtcttagatcttgcaaactgactctccctgaaggattagagtttacaatggagtctagtttacaaatagcaatatcttgtgctgcaatactgtttttaagtatctgaatccaataaaactgctttttccagcacagtatgagcaacctctcgctacttcaaataaatctttggaaaatggc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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