2024-10-04 20:32:55, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_062393380 2266 bp mRNA linear VRT 19-JAN-2024 DEFINITION PREDICTED: Platichthys flesus vimentin-related 2 (vimr2), mRNA. ACCESSION XM_062393380 VERSION XM_062393380.1 DBLINK BioProject: PRJNA1063713 KEYWORDS RefSeq. SOURCE Platichthys flesus (European flounder) ORGANISM Platichthys flesus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Pleuronectidae; Platichthys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_084952) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_949316205.1-RS_2024_01 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 01/16/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2266 /organism="Platichthys flesus" /mol_type="mRNA" /db_xref="taxon:8260" /chromosome="8" gene 1..2266 /gene="vimr2" /note="vimentin-related 2; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:133958521" CDS 178..1353 /gene="vimr2" /codon_start=1 /product="type III intermediate filament" /protein_id="XP_062249364.1" /db_xref="GeneID:133958521" /translation="
MAMLRVSSYRRLFEEETWGRGGGLSLPCAGQYRASVRRAAADKCGCDCDQLDFVAAKSLNKEGLNRFALDRTVIAALNDRLVGLIELARCFEAENESLECQIVELEEKPSRRPAASSTITSPQPDYSLDAVVERLRRERDEILCDTEELHKELECLKSGYQEVAQQRVFYQQERQDVAEVVDAVTAECLALREQVAIYEEQLANMEARHKTEVESMLDPADWTTGAAAALGFCSPDMTPVLDVKEFYCQLAESLQYECGAASPAAVRAGDRKQLEVGAAGGSKVTDSPKIQDVGELKMLISELQKELVELEKCNEELEDEVEMKTSAYMDEIADLKFTMAEMRQQEADFQVQMKEQCEDYKELLSEKMARDMEIVAYRSLLEDEEERLCDL"
polyA_site 2266 /gene="vimr2" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
catgtgagatcgttgccggctgatgttcacgctatagttagtctcctcagcgacagatgagagatccaccgcctcagtggtacattctcattccttgtgaatataaaaccccaacggggagctgctgactcttgtttgcctgttgtgttgtcgtccagtttgaatctgtctgaagccatggccatgctccgagtgtcttcttaccggaggctgtttgaggaggaaacgtggggtcgaggtggagggttgagtttgccgtgtgcggggcagtatcgagcctctgtcaggcgtgcggccgccgacaagtgcggctgtgactgtgaccagctggactttgtcgccgccaagtctctcaacaaggagggtctgaaccggttcgccctggaccgcaccgtcatcgctgccctcaacgaccgcctggtcggcctcatagagctggctcgttgtttcgaggccgagaacgagtcacttgaatgtcagattgtggagctcgaggagaagccgagcagacgcccagccgcctcctccaccatcacctcccctcaacctgactacagcctggatgcagtggtggagagactgcgcagggagagggacgagattctgtgcgacaccgaggagctgcacaaagagctggagtgtctgaagagcggctaccaggaggtggcacagcagagagtcttctaccagcaagaacgacaggatgtggctgaggtcgtggatgctgtgacagcagagtgtttggcgctgagggagcaagtggctatctacgaggagcagctggccaacatggaggcccggcacaagacggaggtggagagtatgctggatccagccgactggaccacaggagcagctgcagctcttggattctgcagcccggacatgactccggtcctggatgtgaaggagttctactgccagctggctgagagtctccagtacgagtgcggagccgcctcccctgctgcagttcgcgctggtgatcgaaaacaactggaagtgggagctgccggagggtcaaaggtcacagactcgccaaagatacaggacgtcggtgagctgaagatgctgatttccgagctacaaaaggagcttgtggagcttgagaagtgtaacgaggagctggaggatgaggtagagatgaagacgtctgcatacatggatgagattgctgatttgaagttcaccatggctgagatgcggcagcaggaggctgacttccaggtgcagatgaaggagcagtgtgaagactacaaggagctgctcagtgagaagatggccagagacatggagattgtcgcctacaggagtctgttggaggatgaagaggagaggctgtgcgacctgtgagtcgaggacgaagagtgagaccaggcggctggagtttggatggatgctcccacacacacagacacacacacacacactcggattagaaaacagacaatagtaaaatgcagacccaaatcggcactaggacaaagctcaaggtacagacggagcaatttgagcagatgtaaacttatcatgacagattaatgctgtctggaggcctaagccggcccattgataacaggtcgctggcagatgaccccgagactccaagaaagatggaagtgtctaaaagtgggagggaggtgggaggaaggaggaatggggttcaggccaggagtgtgtatccattcagtgtctggcagggatatttcctcaagtgggttttatctttaccagttcagtgatgtgattcataaatgttttgtcccctcattgtcgaacaagtctcacacacaaacacacacactcacacgcacaccagaggctgagcagtgcggctccttgaagtgctccctcctctgattccacctcgtccatcactcacactctgtctgattaccagctcttaacccttgaccccttcactgttaacaaacacattgacctccccccctcccccccgtgaccaaaagcgtctcaccgtcctttagcttttacagtcgcgcattcatgttggtttttacatgtaactgtttgcttttcaaatggttcgtgaagatgtttccctgcagctcatatacgagtccagcacctggatccttctacaagaaaagagtccttattccttcctagtacacgactttagtgatccttttttttccgtatttgctccaagtcgtgtgtgataaatcatctttggctcctgcttctgcccgagagtcagaatgtgcttcagatttaaattaaataaaagtgtttgcttgagaga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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