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2024-10-04 20:32:55, GGRNA.v2 : RefSeq release 225 (Jul, 2024)

LOCUS       XM_062393380            2266 bp    mRNA    linear   VRT 19-JAN-2024
DEFINITION  PREDICTED: Platichthys flesus vimentin-related 2 (vimr2), mRNA.
ACCESSION   XM_062393380
VERSION     XM_062393380.1
DBLINK      BioProject: PRJNA1063713
KEYWORDS    RefSeq.
SOURCE      Platichthys flesus (European flounder)
  ORGANISM  Platichthys flesus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei;
            Pleuronectidae; Platichthys.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_084952) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_949316205.1-RS_2024_01
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 01/16/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2266
                     /organism="Platichthys flesus"
                     /mol_type="mRNA"
                     /db_xref="taxon:8260"
                     /chromosome="8"
     gene            1..2266
                     /gene="vimr2"
                     /note="vimentin-related 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     Proteins"
                     /db_xref="GeneID:133958521"
     CDS             178..1353
                     /gene="vimr2"
                     /codon_start=1
                     /product="type III intermediate filament"
                     /protein_id="XP_062249364.1"
                     /db_xref="GeneID:133958521"
                     /translation="
MAMLRVSSYRRLFEEETWGRGGGLSLPCAGQYRASVRRAAADKCGCDCDQLDFVAAKSLNKEGLNRFALDRTVIAALNDRLVGLIELARCFEAENESLECQIVELEEKPSRRPAASSTITSPQPDYSLDAVVERLRRERDEILCDTEELHKELECLKSGYQEVAQQRVFYQQERQDVAEVVDAVTAECLALREQVAIYEEQLANMEARHKTEVESMLDPADWTTGAAAALGFCSPDMTPVLDVKEFYCQLAESLQYECGAASPAAVRAGDRKQLEVGAAGGSKVTDSPKIQDVGELKMLISELQKELVELEKCNEELEDEVEMKTSAYMDEIADLKFTMAEMRQQEADFQVQMKEQCEDYKELLSEKMARDMEIVAYRSLLEDEEERLCDL"
     polyA_site      2266
                     /gene="vimr2"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
catgtgagatcgttgccggctgatgttcacgctatagttagtctcctcagcgacagatgagagatccaccgcctcagtggtacattctcattccttgtgaatataaaaccccaacggggagctgctgactcttgtttgcctgttgtgttgtcgtccagtttgaatctgtctgaagccatggccatgctccgagtgtcttcttaccggaggctgtttgaggaggaaacgtggggtcgaggtggagggttgagtttgccgtgtgcggggcagtatcgagcctctgtcaggcgtgcggccgccgacaagtgcggctgtgactgtgaccagctggactttgtcgccgccaagtctctcaacaaggagggtctgaaccggttcgccctggaccgcaccgtcatcgctgccctcaacgaccgcctggtcggcctcatagagctggctcgttgtttcgaggccgagaacgagtcacttgaatgtcagattgtggagctcgaggagaagccgagcagacgcccagccgcctcctccaccatcacctcccctcaacctgactacagcctggatgcagtggtggagagactgcgcagggagagggacgagattctgtgcgacaccgaggagctgcacaaagagctggagtgtctgaagagcggctaccaggaggtggcacagcagagagtcttctaccagcaagaacgacaggatgtggctgaggtcgtggatgctgtgacagcagagtgtttggcgctgagggagcaagtggctatctacgaggagcagctggccaacatggaggcccggcacaagacggaggtggagagtatgctggatccagccgactggaccacaggagcagctgcagctcttggattctgcagcccggacatgactccggtcctggatgtgaaggagttctactgccagctggctgagagtctccagtacgagtgcggagccgcctcccctgctgcagttcgcgctggtgatcgaaaacaactggaagtgggagctgccggagggtcaaaggtcacagactcgccaaagatacaggacgtcggtgagctgaagatgctgatttccgagctacaaaaggagcttgtggagcttgagaagtgtaacgaggagctggaggatgaggtagagatgaagacgtctgcatacatggatgagattgctgatttgaagttcaccatggctgagatgcggcagcaggaggctgacttccaggtgcagatgaaggagcagtgtgaagactacaaggagctgctcagtgagaagatggccagagacatggagattgtcgcctacaggagtctgttggaggatgaagaggagaggctgtgcgacctgtgagtcgaggacgaagagtgagaccaggcggctggagtttggatggatgctcccacacacacagacacacacacacacactcggattagaaaacagacaatagtaaaatgcagacccaaatcggcactaggacaaagctcaaggtacagacggagcaatttgagcagatgtaaacttatcatgacagattaatgctgtctggaggcctaagccggcccattgataacaggtcgctggcagatgaccccgagactccaagaaagatggaagtgtctaaaagtgggagggaggtgggaggaaggaggaatggggttcaggccaggagtgtgtatccattcagtgtctggcagggatatttcctcaagtgggttttatctttaccagttcagtgatgtgattcataaatgttttgtcccctcattgtcgaacaagtctcacacacaaacacacacactcacacgcacaccagaggctgagcagtgcggctccttgaagtgctccctcctctgattccacctcgtccatcactcacactctgtctgattaccagctcttaacccttgaccccttcactgttaacaaacacattgacctccccccctcccccccgtgaccaaaagcgtctcaccgtcctttagcttttacagtcgcgcattcatgttggtttttacatgtaactgtttgcttttcaaatggttcgtgaagatgtttccctgcagctcatatacgagtccagcacctggatccttctacaagaaaagagtccttattccttcctagtacacgactttagtgatccttttttttccgtatttgctccaagtcgtgtgtgataaatcatctttggctcctgcttctgcccgagagtcagaatgtgcttcagatttaaattaaataaaagtgtttgcttgagaga
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]