2024-09-08 09:22:44, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_061732547 2682 bp mRNA linear VRT 23-DEC-2023 DEFINITION PREDICTED: Cololabis saira vimentin like (viml), transcript variant X2, mRNA. ACCESSION XM_061732547 VERSION XM_061732547.1 DBLINK BioProject: PRJNA1054198 KEYWORDS RefSeq. SOURCE Cololabis saira (Pacific saury) ORGANISM Cololabis saira Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Belonidae; Cololabis. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_084596) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_033807715.1-RS_2023_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/20/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2682 /organism="Cololabis saira" /mol_type="mRNA" /isolate="AMF1-May2022" /db_xref="taxon:129043" /chromosome="10" /sex="male" /tissue_type="muscle" /dev_stage="adult" /geo_loc_name="Japan: Fukushima" /collection_date="2022-05-16" gene 1..2682 /gene="viml" /note="vimentin like; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 92 Proteins" /db_xref="GeneID:133452850" CDS 96..1481 /gene="viml" /codon_start=1 /product="vimentin like isoform X2" /protein_id="XP_061588531.1" /db_xref="GeneID:133452850" /translation="
MSYNRAAPHSSYKKMFGGVERAAARSGYSSRQYSSPVRSSRISFGLSSAPPVYAAKSSGHRLRSSAGMPRLSSDQLDFSLSDAINSEFMTNRTSEKAQMQSLNDRFASYIEKVRFLEQQNKILLAELEQLRGKGSSRVGDLYEDEMRELRRQVDQLTNEKARVEVHRDNLADDIDRLREKLQDEISQREDAESNMQSFRQDVDNAALARLDLERKIESLQDEINFLKKLHDEEMMEMQSQIHQQQHVQVEMDVAKPDLTAALRDVRLQYENLASKNLQESEDWYKSKFADLTEAAARNNDSLRVAKQEANDYRRQVQALTCEVDALKGSNEALERQMREVEENFSMETNGYQDTIGRLEEDIHNMKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISTPLPNFSSMNLRETMIDLKPQFETSTTVNKKVLIKTIETRDGQVINETTQNHDDME"
polyA_site 2682 /gene="viml" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
acgcctatccaggcgtactgcgcggatgctgctgaggctggggcgatctcacaccgcagcagaccactttataaaggtacagtaggaagaagaagatgtcttacaacagagcagccccgcactcatcttataagaagatgttcggcggcgtggagagggcggcggcccggagcggctactccagccgccagtactccagcccggtgcgctcctcccggatctccttcggcctctcctccgctccccccgtctacgcggccaagagcagcggccacaggctccgcagcagcgccggcatgccccggctgtcctccgaccagctggacttctccctgtccgacgccatcaacagcgagttcatgaccaaccgcaccagcgagaaggcgcagatgcagtcgctcaacgaccgcttcgccagctacatcgagaaggtgcgcttcctggagcagcagaacaagatcctgctggcggagctggagcagctgaggggcaaaggctcgtcccgcgtcggggatctgtacgaggacgagatgcgggagctgcggcgccaggtggaccagctcaccaacgagaaggcccgcgtggaagtccaccgggacaacctggcggacgacatagacaggctgagagagaagttgcaggatgagatatcccagcgggaggatgcagagtcaaacatgcagagctttagacaggatgtggacaatgctgccctcgcaagactggacctggagcggaagattgagtcactgcaggatgaaatcaacttccttaagaagctgcatgatgaggaaatgatggagatgcagagccagatccatcaacagcagcacgtgcaggttgagatggacgttgcaaagcccgacctgactgcagctctgagggatgtccgtctgcaatatgagaacctggcctccaaaaacctccaggagtcagaggattggtacaaatccaagtttgctgacctcaccgaagctgcagcccggaataatgactctttgagagtggccaagcaggaggccaatgactacaggcgccaagttcaggcacttacttgtgaggtggatgccctcaaaggatctaatgaggccttggagcgtcagatgagggaggtagaggagaatttctccatggagacaaatgggtaccaggacaccatcggccggttggaggaggacattcataacatgaaggatgagatggcccgtcacctcagagagtaccaggacctcctaaatgtcaagatggccctagacattgagatcgctacctacaggaagctgctggaaggagaggagagcagaatctccacccctctgccaaacttctcctccatgaaccttagagagacaatgattgatttaaaaccccagtttgaaacgtcaacaaccgtcaacaagaaagttctcatcaaaaccattgagaccagagatgggcaggtgatcaatgaaacaacccagaaccacgatgacatggagtgataatctcctcatctttgccaaacagccaatacaagcaataagaagagacacatttcaccctggcaacaagcaagcaaacaaacaaacaaacccacgaaaagcaaacagccttgagaagtgcctttatatgtgatgatccagcaagctgttagttgacacagactgttttttttttgctttctcttcagtcacgtttgtttagactcattgtagaactcaaacacagcatagaaagcctcactgaggtttacataaagctttctttgtcaccaaagtagtatttttgatcaatatagcatgcacaacttcaagaaacctgtatgctaaagatgtcacaattgcctgtatgcagcaataaactacgaagactttaagtcaacactgtgcctaggagtaatactttgtatactttatggtaagaacatggcattaggctctataattaacattttaacaaattcatgaactgaaaactttttattttgctagtgttaagcctgtgaaataactcatttgttttcaataacagcacatgctttacatgggtcactaatagcatgattttgaaaacatataaactaaacataaattattcttgtaaataagtggattcctataagaaaaaggaattggaaaagaaatctgatggtgaagtgagctgagttgagtagtctgataatcttcatgtaggtatttattgggatacgtatattccatgaaggtaaagtacttttcaatcactgtttactctgcaaggtccttttcaaactggtggggacacaagacagtttggaaatattcacggacttcctcagagtctttggttgatgcatctgcacttcattgcttttaacattaatgtatttaactgcacaaaggaagaaagtggactgctgcttcaagctgtgaattagattacaagaattacatcaccttctccgagacagttgtgaaaaatgctgataattcaacaataagttgaatttttgtggacaggtttatctaacaagcggccatgttagtctacagtataacacaaggcattgtcatcactgctctgctgaaggcaaacacacataaagctgttttatattaactctttgacgaatgatatatgaaataatacacagaaaattacatgttttttttttatttacagtgtctataatacataaagaataaagaaattcccaagtctgtc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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