2024-09-08 09:39:06, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_061468347 2069 bp mRNA linear VRT 14-DEC-2023 DEFINITION PREDICTED: Pezoporus flaviventris vimentin (VIM), mRNA. ACCESSION XM_061468347 VERSION XM_061468347.1 DBLINK BioProject: PRJNA1049385 KEYWORDS RefSeq. SOURCE Pezoporus flaviventris ORGANISM Pezoporus flaviventris Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Psittaciformes; Psittacidae; Pezoporus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_026892595) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_033815535.1-RS_2023_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2069 /organism="Pezoporus flaviventris" /mol_type="mRNA" /isolate="CSIRO_AGI_PZ_B2104156" /db_xref="taxon:889875" /chromosome="Unknown" /sex="female" /tissue_type="kidney" /dev_stage="adult" /geo_loc_name="Australia: WA, Perth Zoo" /collection_date="2021-04-21" /collected_by="Perth Zoo" gene 1..2069 /gene="VIM" /note="vimentin; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 43 Proteins" /db_xref="GeneID:133276950" CDS 91..1470 /gene="VIM" /codon_start=1 /product="vimentin" /protein_id="XP_061324331.1" /db_xref="GeneID:133276950" /translation="
MSISTKNSSYRRMFGGGTRPSTGTRYITSSTRYSLGSSLRPSTARYVSASPGGMYASKTTSVRLRSSMPPMRLHDSVDFSLADAINTEFKANRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGKGTSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLADDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIVFLKKLHDEEIRELQAQLQEQHIQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQEANEYRRQIQSLTCEVDALKGSNESLERQMHEMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRINMPIPTFASLNLRETNIESQPMVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"
polyA_site 2069 /gene="VIM" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
ccccgggcagctccgccgcccttcttcgcccgtcgtgccgcccagcagctccgctccggtcccggattacaaagccgaaccgccgccgccatgagcatcagcactaagaactcgtcgtaccgccgcatgttcggcgggggcacccgccccagcaccggcacccgctacatcacctccagcacccgctactcgctgggcagctcgctgcgacccagcaccgcccggtacgtgtccgcctcgcccggaggcatgtacgccagcaagacgacgtcggtgcggctgcggagcagcatgccgcccatgcggctccacgactccgtggacttctccctggccgacgccatcaacacggagttcaaggcgaaccgcaccaacgagaaggtggagctgcaggagctcaatgaccgcttcgccaactacatcgacaaggtgcgcttcctcgagcagcagaacaagatcctcctggccgagctggagcagctcaagggcaagggcacgtcccgcctgggcgacctgtatgaggaggagatgcgggagctgcggcggcaggtggaccagctcaccaacgacaaggcacgcgtggaggtggagcgggacaacctcgccgacgacatcatgaggctgagggagaagttgcaagaggagatgcttcagagggaggaagctgagaacaccctgcagtccttcagacaggatgttgacaatgcctctctggcacgtcttgaccttgagcgcaaagttgagtccctgcaagaggagattgtcttcttgaagaagcttcatgatgaggaaatccgagaactgcaggcccaactccaggaacagcacatccaaattgatatggatgtttctaagcctgatcttactgctgccctgcgtgacgttcgccaacagtatgaaagtgttgctgctaagaatcttcaggaagctgaagagtggtacaagtccaaatttgcagatctctccgaagctgctaataggaacaacgatgccctgcgccaggccaaacaagaagctaatgagtaccgcagacagattcagtctctcacctgcgaagttgatgcccttaagggaagcaatgaatccctggagcgccaaatgcatgaaatggaggagaattttgctgtcgaagctgctaactaccaagacactattggccgtctgcaggatgagattcagaacatgaaggaagaaatggctcgccatctccgcgagtaccaggacctgctgaatgtaaagatggctcttgatatcgagattgccacctacagaaaactgctggagggtgaagagagcaggattaacatgcctattccaacctttgcctctttgaacctgagagaaactaacattgagtctcagccaatggttgacactcactcaaagaggacacttctaattaagactgtcgaaactagagatggacaggttattaatgagacttcccagcatcatgatgacttggagtaaagctgaagtgaagatgcatacttataagtgcaggagaaattcttaccagcaagatttaaaaagtccatgtcttaaaggaagaaacagctttcaagtgcctttctgcagtttttccatgagcgcaagattattatgctaggaaataggtcttagatcttgcaaactgactctccctgaaagattagagtttacaatggagtctagtttacaaatagcaatatcttgtgctgcaatactgtttttaagtatctgaattcaataaaactgctttttccagcacagtatgagcaacctgtcgctacttcaataaatctttggaaaatggctattgatgtgttctaatttgttaactttatgactttctggaaagccataacatcataatgctggaattactgtacggttgacatctagtactggttgtgtggattgctgtttttttcagtttaactagataaactgtcttactcatttactgcttaggttttggaaccaactaaaatggactataactggcagatgcataatgtattatgatatttcttatcacttgaataaaatctgatacttcaagctaataaaaattaatcttgctttca
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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