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2024-07-15 05:00:20, GGRNA.v2 : RefSeq release 224 (May, 2024)

LOCUS       XM_061436138            1893 bp    mRNA    linear   MAM 13-DEC-2023
DEFINITION  PREDICTED: Bos javanicus vimentin (VIM), mRNA.
ACCESSION   XM_061436138
VERSION     XM_061436138.1
DBLINK      BioProject: PRJNA1049397
KEYWORDS    RefSeq.
SOURCE      Bos javanicus (banteng)
  ORGANISM  Bos javanicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia;
            Pecora; Bovidae; Bovinae; Bos.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_083880) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_032452875.1-RS_2023_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1893
                     /organism="Bos javanicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9906"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="whole blood"
                     /dev_stage="adult bull"
                     /country="USA: Glen Rose, Texas"
                     /collection_date="2020-06-27"
                     /breed="banteng"
     gene            1..1893
                     /gene="VIM"
                     /note="vimentin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 155 long SRA reads, 23
                     Proteins"
                     /db_xref="GeneID:133259104"
     CDS             174..1574
                     /gene="VIM"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="XP_061292122.1"
                     /db_xref="GeneID:133259104"
                     /translation="
MSTRSVSSSSYRRMFGGPGTASRPSSTRSYVTTSTRTYSLGSALRPTTSRTLYTSSPGGVYATRSSAVRLRSGVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQEQHVQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQTLTCEVDALKGTNESLERQMREMEENFSVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLPLPNFSSLNLRETNLDSLPLVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"
     polyA_site      1893
                     /gene="VIM"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
aactgcgccccgcgcggggtcctgtcctctgccactctcgctccggtgtccccgcgccagagacgcagcagcgctccctctgcccacacccaccgcgccctcgcgctcgcctctccttccggagccagtccgtgctaccgcagtcgcccagtccaccaccaccctctgcagccatgtccaccaggtccgtgtcctcgtcctcctaccgcaggatgttcggcggcccaggcaccgcgagtcggccgagctccacccggagctacgtgaccacatccacccgcacctacagcctgggcagcgcgctgcgccccaccaccagccgcaccctctacacctcgtccccgggtggcgtgtacgccacgcgctcctcggccgtgcgcctgcggagcggcgtgcccggcgtgcggctgctgcaggactcggtggacttctcgttggccgacgccatcaacaccgagttcaagaacacccgcaccaacgagaaggtggagctgcaggagctcaatgaccgcttcgccaactacatcgacaaggtgcgcttcctggagcagcagaacaagatcctgctggctgagctcgagcagctcaagggccagggcaagtcgcgcctgggggacctctacgaggaggagatgcgagagctgcgccggcaggtggaccagctcaccaacgacaaagcccgcgtcgaggtggagcgcgacaacctggccgaagacatcatgaggctccgggagaagttgcaggaggagatgcttcagagagaggaagccgagagcactctgcagtctttcagacaggatgttgacaatgcctctttggcacgtcttgacctggagcgtaaagtggaatccttgcaagaagagattgcctttttgaagaaactgcatgatgaggaaatccaggagcttcaggcccagattcaagaacagcatgtccaaatcgatatggatgtttccaagcctgacctcacggctgccctgcgtgatgtccgtcagcagtatgagagcgtggccgccaagaaccttcaggaggctgaggaatggtacaagtccaagtttgctgacctctctgaagctgctaaccgcaacaatgatgccctgcgccaggccaagcaggagtcaaatgagtaccgccggcaggtgcagactcttacctgcgaggtggatgcgctcaaagggactaacgagtctctggaacgccagatgcgtgaaatggaagagaacttctctgtggaagctgctaactaccaagacactattggccgcctgcaggatgagattcagaacatgaaggaagagatggctcgtcacctgcgcgaataccaagacctgctgaatgtcaagatggcgctcgacatcgagatcgccacctacaggaagctgctggaaggagaggagagcaggatttctctgcctcttccaaacttttcttccctgaacctgagggaaaccaatctggattcactccctctggttgacactcactcaaaaaggacacttctgattaagacggtggaaaccagagatggacaggttatcaacgaaacttcccagcatcacgatgatctggaataaaaactgcacatacttcgtgcagcaaaatactaccagcaagaaggaaaaaaaaaatccatatcttaaagaaacagctttcaagtgcctttctgcagttttttcaggagcgcaagatagatttggaataggaataagccctagttcttgaaccaacacccgtaaaagatttagaaaaaagtttacaacataatctagtttaccgaagacgccttgtgctagaatactttttaaaaagtatttttgaataccattaaaactgcttttttccatcaagtatctgaccaacttgtttctgcttcaataaatctttggaaaactc
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]