2024-09-08 09:36:31, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_061346131 2074 bp mRNA linear VRT 11-DEC-2023 DEFINITION PREDICTED: Neopsephotus bourkii vimentin (VIM), mRNA. ACCESSION XM_061346131 VERSION XM_061346131.1 DBLINK BioProject: PRJNA1050157 KEYWORDS RefSeq. SOURCE Neopsephotus bourkii (Bourke's parrot) ORGANISM Neopsephotus bourkii Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Psittaciformes; Psittacidae; Neopsephotus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_026900766) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_033783945.1-RS_2023_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/09/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2074 /organism="Neopsephotus bourkii" /mol_type="mRNA" /isolate="Nb327-2" /db_xref="taxon:309878" /chromosome="Unknown" /tissue_type="muscle" /dev_stage="adult" /ecotype="Australia" /geo_loc_name="Australia" /collection_date="2022" gene 1..2074 /gene="VIM" /note="vimentin; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 43 Proteins" /db_xref="GeneID:133208325" CDS 96..1475 /gene="VIM" /codon_start=1 /product="vimentin" /protein_id="XP_061202115.1" /db_xref="GeneID:133208325" /translation="
MSISTKNSSYRRMFGGGTRPSTGTRYITSSTRYSLGSALRPSTARYVSASPGGMYATKTTSVRLRSSMPPMRLHDSVDFSLADAINTEFKANRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGKGTSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLADDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIVFLKKLHDEEIRELQAQLQEQHIQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQEANEYRRQIQSLTCEVDALKGSNESLERQMHEMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRINMPIPTFASLNLRETNIESQPMVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"
polyA_site 2074 /gene="VIM" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
ggggccccggccggggccgccgcccttcttcgcccgccgtgcagtcgagcagccctgctccggtcccggattacaaagcccgcacagccgccgccatgagcatcagcactaagaactcgtcgtaccgccgcatgttcggcgggggcacccgccccagcaccggcacccgctacatcacctccagcacccgctactcgctgggcagcgcactgcgacccagcacagcccggtatgtgtccgcctcccccggcggcatgtacgccaccaagacgacgtcggtgcggctgcggagcagcatgccgcccatgcggctccacgactccgtggacttctccctggccgacgccatcaacacggagttcaaggcgaaccgcaccaatgagaaggtggagctgcaggagctcaatgaccgcttcgccaactacatcgacaaggtgcgcttcctcgagcagcagaacaagatcctcctggccgagctggagcagctgaagggcaagggcacgtcccgcctgggcgacctgtacgaggaggagatgcgggagctgcggcggcaggtggaccagctcaccaacgacaaggcacgcgtggaggtggagcgggacaacctcgccgacgacatcatgcggctgagggagaagttgcaggaggagatgcttcagagggaggaagctgagaacaccctgcagtccttcagacaggatgttgacaatgcctctctggcacgtcttgaccttgagcgcaaagttgagtccctgcaagaggagattgtcttcttgaagaagcttcatgatgaggaaatacgagaactgcaggcccaactccaggaacagcacatccaaattgatatggatgtttctaagcctgatcttactgctgccctgcgtgacgttcgccaacagtatgaaagtgttgctgctaagaatcttcaggaagctgaagagtggtacaagtccaaatttgcagatctctccgaagctgctaataggaacaacgatgccctgcgccaggccaaacaagaagctaatgagtatcgcagacagattcagtctctcacctgcgaagttgatgcccttaagggaagcaatgaatccctggagcgccaaatgcatgaaatggaggagaattttgctgtcgaagctgctaactaccaagacactattggccgtctgcaggatgagattcagaacatgaaggaagaaatggctcgccacctccgcgagtaccaggacctgctgaatgtaaagatggctctcgatatcgagattgccacctacagaaaactgctggagggtgaagagagcaggattaacatgcctattccaacctttgcttctttgaacctgagagaaactaacattgagtctcagccaatggttgacactcactcaaagaggacacttctaattaagactgtcgaaactagagatggacaggttattaatgagacttcccagcatcatgatgacttggaataaagctgaagtgaagatgcatacttataagtgcaggagaaattcttaccagcaagatttaagaagtccatgtcttaaaggaagaaacagctttcaagtgcctttctgcagtttttccatgagcgcaagattattatgctaggaaataggtcttagatcttgcaaactgactctccctgaaagattagagtttacaatggagtctagtttacaaatagcaatatcttgtgctgcaatactgtttttaagtatctgaattcaataaaactgctttttccagcacagtatgagcaacctgtcgctacttcaataaatctttggaaaatggctaatgatgtgttctaatttgttaacttcatgactttctggaaagccataacatcataatgctggaattactatacggttgacatctagtactggttgtgtggattgctgtttttttcagtttaactagataaactgtcttactcatttattgcttaggttttggaaccaactaaaatggactataactggcagatgcataatgtattatgatatttcttatcacttgaataaaatctgatacttcaagctaataaaaattaatcttgctttca
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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