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Previous release (v1)
2025-10-24 11:57:57, GGRNA.v2 : RefSeq release 232 (Sep, 2025)
LOCUS XM_061326275 3656 bp mRNA linear INV 07-DEC-2023
DEFINITION PREDICTED: Saccostrea echinata uncharacterized LOC133190573
(LOC133190573), mRNA.
ACCESSION XM_061326275
VERSION XM_061326275.1
DBLINK BioProject: PRJNA1046542
KEYWORDS RefSeq.
SOURCE Saccostrea echinata
ORGANISM Saccostrea echinata
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia;
Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae;
Saccostrea.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_026889771) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Status :: Full annotation
Annotation Name :: GCF_033153115.1-RS_2023_12
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 10.2
Annotation Method :: Gnomon; cmsearch; tRNAscan-SE
Features Annotated :: Gene; mRNA; CDS; ncRNA
Annotation Date :: 12/02/2023
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..3656
/organism="Saccostrea echinata"
/mol_type="mRNA"
/isolate="AGI-Se365-2"
/db_xref="taxon:191078"
/chromosome="Unknown"
/tissue_type="muscle"
/ecotype="Australia"
/geo_loc_name="Australia"
/collection_date="2022"
gene 1..3656
/gene="LOC133190573"
/note="uncharacterized LOC133190573; Derived by automated
computational analysis using gene prediction method:
Gnomon. Supporting evidence includes similarity to: 1
Protein"
/db_xref="GeneID:133190573"
CDS 48..851
/gene="LOC133190573"
/codon_start=1
/product="uncharacterized protein LOC133190573"
/protein_id="XP_061182259.1"
/db_xref="GeneID:133190573"
/translation="
MQLRIKFISSSTHTVPYSTADLVYGVETSQSDIVEGRCNSFVDVAGRESRVSSCELKESDYRHSSGRGRPGKSVSIEKVNFCKETDDNFGPHQFFPSTKHIQCRPNAVRSSIIRGDPMYSMRTNSLASGRDTEDLIAMGTIWSPNAQTPAKQLNSSTSSASTVTNSAITNVTGRNMQMYTTQGSNSSTGIPQTCRGRYTISGMRPILVQTSRNSNVKDVDPRYADPVVGAPASFQQRLMELSALEGETIRYERSKKVKKKVKQDRDS"
polyA_site 3656
/gene="LOC133190573"
/experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN
acctttgggaacgaacacccattctattattgttgaaccccagcgaaatgcagctaaggattaaatttatttcttcctcgacccacacagtgccttattccactgctgatcttgtgtatggtgttgaaaccagtcaatctgacatagttgaagggagatgcaatagttttgttgatgtagctggaagagaatcaagagtctcatcttgtgaactaaaagaatcagattacagacattcaagtggcagaggaagacctggaaaatctgtatctattgaaaaagtaaatttctgcaaggaaactgatgataattttggacctcatcaattttttccttcaacaaaacatatccagtgtagaccaaatgcagttaggagcagtattattagaggagatcctatgtacagtatgaggacaaacagtcttgcttcaggaagagatactgaggatttaattgcaatgggaacaatatggagtccaaatgctcaaacacctgcaaaacaattaaacagcagcacaagtagtgctagtactgtcacaaacagtgctattacaaatgtcacaggcagaaatatgcaaatgtatacaacacaaggatcgaatagttcaacaggaatacctcagacttgtagagggcgctacaccatatcaggaatgagaccaatactggttcaaacatcaagaaactccaatgtaaaagatgttgatccaagatatgcagatccagtagttggtgctcctgcttcatttcaacaaagactaatggaacttagtgcacttgagggagaaactatacgatatgaaagaagtaaaaaagtgaagaagaaagtcaaacaggatcgtgactcttaattgcatatggtttcttgggatttctcatcattcattagttaagctgagccatagttccagggctctctgatggaagtttgtctgtcatcaaagtgtaagtttgctggtctgttaccttcttatgtacatgtattcatcttcctcagtgccactgcagtagtttcaaccaaaatttgtcatagaggttcaaaatggtcatgctactttttcagagaaatgttacacaaattacattactgtagttatatttgacaagcatccccatatatttatagttatacaaaaattacattttattaaaatgatgatattttgcttactttaaggaataggatcatcaagtcttgtcagttgatgcatctaaggacctcgtatcatgttgactcaaaagctggtcacggtgacctgcattttaaattttgaggccattctttttcaaaatgatttagaggcatattttgaacaatttaaggcctatgatcaaactttgtcagttgatgtatcttgggtctgcagagaacgtcaactaaaaagtaggtcaccttgacctactttttgaattttatggctaatgtttttcaaaacaattaaggtcattaattcgaatactgagaggtttagaatcattaaatcttgtaagatgatgcatcttggggccatgaaacatatttattaaaaagtaggtcaaagtgaccttctttttgaactttgcagtctttcaatttcatagcattttagaggcataatttggacattttaaggcctatgattataaaactttctaagttgatgcatcttgagtcctcgaaaaacgtcaattgaaaagtaagtcaccatgacctatttttgaaaatttatggctatatttaaatatttagggtactttttgacttagaatcatcaaaatttgtcagttgatgtatcttgggtccacagagtacatcaactgaaaagtaggtcatggtgacttaattttcaatttatatgactataatcaaatattttttcgggtaataattggcttagaatcatcaaactttgtcagttgatgcatcttgggtcctcggagtaagtcaactgaaaagtaggtcaccgtgacctacttttgaaaatttatggctttaattaaatatttttcaggtattaattggcttagaatcatcaaactttgtcagttgatgcatcttgggtccttggagtatgacaactgaaaggtaggtcaccttgacctacttttgaaattttatggctgtatttaatattttctggcactatttggcttagaatcatcaaaatttgtcagttgatgtatcttgggtcctgtgagtcggtcgactgaaaagtaggtcaccttgaccttcttttcaatttataaactataattaaatatttcgggtactgtttggcttagaatcatcaaactttgtcagttgatgcatcttgggtcttcggagtaggtcgactgaaaagtaggtcactttgacctaatttatgactttagttaaatatttcaggtactaattggcttagaatcatcaaactttgtcagttgatgcatcttgggtcctcggagtacaacacctgaaaagtaggtcactgtgacctacttttgaaaatttatggcttttattaaatatttcgggtactaattggcttagaatcaacaaactttgtcagttgatgcatcttgggtccacggagtaagttgactgaaatgtaggtcaccatgacctacttttgaaattttattactttatttaaatatttttaggtaataattggctaagaatcatcaaactttgtcagttgatgcatcttgggtccgcatagttagtcgactgaaaaggaggtcactgtgacctatttttgaaattttatggttataatttaaaaattattttaggtattaattggcttagaatcatcaaacttagttgatgcatcttgggtcctcagagaatgacaagtgataagtgggtcaccatgacctactctcaggtactaattagcttagaatcatcttggattcccagagtgtttcatctaaaatgtaggtcatgatgacctacctttggaatttcaaggctttatctaaatattcaagatacttggaagcttcagatagaagtgatagtttgtacagtttatcggaagagcgattcaaggcccttgggcctcttgttttagtttgttttttctttctcaaaaatggggctacatttgacaattatacaagtgtcaataggtaatgaagatttaactttattgaaataatgccatagagggatagagtggggccttaataggcgatcatagtttaataaaaatgccttttacaagaacagcaagggcatgagaagtcataactagaagcaagcatctgattcaccatgtatttttcaaatcatggccttggagggggtgggaggggttttcatattattgttggggacaatatatatctacccccactgcattaactgtcatctattgtgcattttgtaaccagctgaagaaaacataaaaatgtacatattgttatttatgtacaaatataaaaatgtacatattgttatcaatgacaaaactgtccctaaattcactgcacatattgttgcttcaaattatggttacttaaggaatttttttggttttatgaatgcaatatgtaaagcatgtagatctgtcatgtaggcaaattcgtgaagcgcaatattgattatggtaattgtccaagtttactttctttgcataaaatttttcattagcttgtatgttcaataaagacaaatttagttttaaaca
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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