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Previous release (v1)
2026-03-04 05:04:30, GGRNA.v2 : RefSeq release 233 (Jan, 2026)
LOCUS XM_061307220 7866 bp mRNA linear INV 07-DEC-2023
DEFINITION PREDICTED: Saccostrea echinata ecdysteroid-phosphate
phosphatase-like (LOC133172352), mRNA.
ACCESSION XM_061307220
VERSION XM_061307220.1
DBLINK BioProject: PRJNA1046542
KEYWORDS RefSeq.
SOURCE Saccostrea echinata
ORGANISM Saccostrea echinata
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia;
Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae;
Saccostrea.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_026889803) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Status :: Full annotation
Annotation Name :: GCF_033153115.1-RS_2023_12
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 10.2
Annotation Method :: Gnomon; cmsearch; tRNAscan-SE
Features Annotated :: Gene; mRNA; CDS; ncRNA
Annotation Date :: 12/02/2023
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..7866
/organism="Saccostrea echinata"
/mol_type="mRNA"
/isolate="AGI-Se365-2"
/db_xref="taxon:191078"
/chromosome="Unknown"
/tissue_type="muscle"
/ecotype="Australia"
/geo_loc_name="Australia"
/collection_date="2022"
gene 1..7866
/gene="LOC133172352"
/note="ecdysteroid-phosphate phosphatase-like; Derived by
automated computational analysis using gene prediction
method: Gnomon. Supporting evidence includes similarity
to: 13 Proteins"
/db_xref="GeneID:133172352"
CDS 12..1889
/gene="LOC133172352"
/codon_start=1
/product="ecdysteroid-phosphate phosphatase-like"
/protein_id="XP_061163204.1"
/db_xref="GeneID:133172352"
/translation="
MASASLPARSNRDDSIKRTKRQTALDTLVSMGFPRNRAEKAIAATGDRGIQLASDWLLSHVDDPTLDDGTSREYVLYLCPNGKMQDELNKFWEKSLTQCGWNGAHSYFPHITMCPFFTADDKDVGFLSESFLKLENKLRRAPDTLKLDFFSQMNFIGLFVKDTMYEFLQECVSMFSKELAKGGVKVEPHKKQLHLTLAYQYPSEQHDKLLKYAKEIDLGVDVRWDLRLYSRDPRAGRSEIRRVVKAYTPQVGDELELIDGDFIFLDPKELTKTKDGWYPGISWLTGILGMFPGVYTQKTAETWTWMLHRSLPLQVRPKSVAVTNGIIVEEDYDAIWHDDKDYAKVNKNFIKEKKQRMPSVEKREQRRLIVCRHGERTDFAMGKGWYDMCFDDDGRYSRINLNLPKKMLTRSNNLEYINDPPLTEVGKLQAQLTADTLTENRITISAVYSSPSLRCVQTATEIYQVLKLQNKIKIEPGLFEWTGHTNVVPRWISPEDLAKQGYPIETSYLPQVPRDKLEDGESISNLYARSTETSRQILKLYESKGGNILFIGHSGTLDLCTRVITGQTPRTTMSYREFLPKVPYVAMCAIEEDVITRKWKFIDPPTLPLSHGRNIVQNVRDILNG"
misc_feature 78..191
/gene="LOC133172352"
/note="UBA domain found in ubiquitin-associated and SH3
domain-containing protein B (UBS3B) and similar proteins;
Region: UBA_UBS3B; cd14301"
/db_xref="CDD:270486"
misc_feature 735..905
/gene="LOC133172352"
/note="Src Homology 3 domain superfamily; Region: SH3;
cl17036"
/db_xref="CDD:473055"
misc_feature order(744..746,750..752,759..761,771..773,837..842,
885..887,891..896)
/gene="LOC133172352"
/note="peptide ligand binding site [polypeptide binding];
other site"
/db_xref="CDD:212690"
misc_feature 1107..1718
/gene="LOC133172352"
/note="Broad specificity phosphatase PhoE [Carbohydrate
transport and metabolism]; Region: PhoE; COG0406"
/db_xref="CDD:440175"
polyA_site 7866
/gene="LOC133172352"
/experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN
tgtttgtaaatatggcgtctgcaagtttacctgctcgaagtaatagggatgattccattaaaagaacaaagcgacagactgccctggacaccctagtgtcaatggggtttcccaggaatagagcagaaaaagcaattgccgcaacaggagatcgcggaattcagctggcctctgactggcttctgtcacatgtagatgatcctaccctagatgatggcacgtccagggaatatgtcctatatctgtgtcctaatggtaaaatgcaggatgaactcaacaaattttgggagaagagccttacccagtgtggatggaatggggctcactcctacttcccccacatcaccatgtgtccattcttcacagctgatgacaaagatgttggttttttgagcgagagctttctaaagctagaaaacaaactcaggcgggcccctgacactttgaagttggatttctttagccagatgaatttcattggattatttgtgaaggataccatgtatgaattcctgcaagaatgtgtctcaatgttcagcaaagaattagccaaaggaggagttaaagttgagccacacaagaaacagctccacctgactctggcctaccagtacccatcagaacaacacgataagctcctgaaatacgccaaagaaatagatctcggtgttgatgtaagatgggacctccgtttgtattctagagatccaagggctggcagaagtgagatccgtcgagtggtgaaggcctacacaccgcaagttggggatgagttggaacttattgatggagatttcattttcttggatccaaaagaacttactaaaaccaaagatggctggtatcccgggatctcatggctgactgggattctgggaatgttcccgggagtctacacacagaaaacagccgaaacatggacctggatgcttcacagatctctaccactgcaagtaagacccaagtctgtagctgtgaccaatggaatcattgtagaggaagattatgatgcaatctggcatgatgacaaggattatgccaaggtcaacaaaaacttcattaaagaaaaaaagcaacgaatgccttctgtggaaaagcgagaacagaggagattgattgtatgtcgccatggcgagaggacagactttgccatgggtaaagggtggtacgatatgtgctttgatgatgatggtagatattccaggattaacttgaatttgccaaagaagatgttgacaaggtcgaataaccttgagtacataaatgacccacctctgacagaagtaggaaagttacaagcacagctaacagccgacacgctgacagaaaatagaataacaatatcagcagtgtattcatctccttctttacgatgtgttcaaacagcaactgaaatttatcaagtactaaaactccaaaacaaaataaagatagaaccaggtttgtttgagtggacaggtcacacaaatgttgtacccaggtggatttctcctgaggatttggccaagcagggttaccctattgaaacctcgtacctcccccaggtacccagggacaagctggaagatggggaatcgatcagtaatctgtatgctcgatccacagaaacctccaggcaaatacttaaactgtatgaaagcaaaggaggcaatattttgttcatcggtcattctggtactttggatttatgcacacgagtcatcactgggcagactccacggaccaccatgtcatacagagagttcctcccgaaggtgccgtatgtggccatgtgtgcaatcgaggaggatgtgatcacaaggaagtggaaatttattgatccacccaccttacccctatctcacggacgcaatattgtacagaatgttagagatattctgaatggatgacattcatttcagaattcaaaggaattgtttgtgccaatagctaacatttagctacataatgcaaaggaagccattattttatacctgtgaatagtataacaaaactctattatatgtaattttacctacactaacaaatttttaaaaaatctcttcagcaggtttgaagaaacaaaaatgtttttatgattaatgaattttacagaatgttacaaaatgaggcccttgagccacagtgcttacctgaattgcatttcacttcaaatggaaatgaatatgtaaaagaataaaataataataagataaaagaaagaaagacaaaaaaaatccagttatgtgttcctttcctttaaaactagtgatttcagcagttttcagtcagttaatataaatttactactcattgtcttgttgtatgtaaggtagctctaagttttaattgctgttgaatcatttgaaaaaaaaacactgattgttgttgaaaaggttttaaaatgacactgtgtcatttatatccccttcaaagtggagaatggcagctcaattgaacaaacttaagtcttcttgaacaaagaatgattttggttgaaattagcttatttgttctggagatgtagaaaatgggaaaagttaacaaacagacaacagacagacagctactcagataattaacaaggattgatcagagaagctcccttgatcttaggctcagatgatcttaaaagttaggttactccagtgtggccgtattctttttaatgcatcacacaacattcaattttagaaattgtgtctttcatacattattgtatttgatttctttatgcagtgcttttttttaaaaacaaaaacttttattttgctgatgtaaagttatctctcttagaagaggaatgatccaccttaaagagtgatgttctgctgatttttttcagcaatgaccaattttcaaaagtatttatgaagtaaatgtaccaatactatatttttatttttgtcaaaaagatattttttttttaatattccagaaatatgagatttatttatataagtagtacttaagatgaattcaaaggtgttcttgaaaatgagctactgtttagcattttcatagatttatatatgtcatcttttctcagatggctgttgcatgtttaaaattttcttcattgctgataagtgacatcgatccgtatttgttgtcctttgatgtgatgatttttattttttgctgtgtttttccttgttggtgtcatttagatctttgttaagttgataattgttgttgatgtatatagacaaattttatttctttttatactgtatcattgatagttgggtaaccccaccgctcatcaaaaaagccaaaacaactcaccctctcatcgcagaatactctcaaccatttccgatattcacccttcacaaatattgaatttttaattcattttgctttgttttaatgggacatataattttgtattttaagcaatttttttattttacattgcatattttttttaaaaatacttttcaattttaattaatataacactttgctatgcttttataagaacttttgatcactattttgtctctacatcagccagactttcgtgccatgatgaaaacatgctcagttgatatccttgtatatacaaatgaaaaatcattaaaatttaagggtcacccaatttcttaaggtgacattaatgagtgtccctcctctgtgcccttattataaagtgttcaaaatagtaggctttattccagaaacttttgaaactattttaagcagtttttataaaggtaatatcccttaggaagaatatgaaatattcaaaacttcacaatcctgaacctcctagggtaaagtaaagccatgacatgattttttccccccatttttgcagttattggtacatgtaattttatttagcatacaaaaaactgttttcatgattttcatgatggacagtaacccctctaacagaactgatgaattatattcctttggtattgagggtattggtttcatgctttggattggaagtgtaagaacctatggggttattaagctctataacaggggctacattgatcttatactggcctatggcctttcatttgctctaggaagatattttatttttggtactgttgtgatttttttctttatttttttctctcaaaattttgtagagaagtttgcttttacatttggcctagcataatttttaccaaggtatctgatttgaattgtcataattttcagcataggaactttttagctctgaatatgtctgtttttatttacaagttttaaattatttgacatgctttcaaaaatttagcataaactttggagcaaacatgaattaatgttgatatgattctttaaacaattcaattcaattcaattttttcaattcaattgtttatttaccaattaagggccctcatggggcaaaaagaaggtacattttaaacacctgtatatttcatataaattagtgctgattaattaccaagtggcgattaagaatttatgtgctaaggaaagcaccaagtgcacaaaactaggaataatgctaaatgtaagttaagaactggtattttttcagcatttgagaattaattgttcttaaccaattgatttaaactcttgtattcatgagatgggttttttttttagttttctaagttcaatttctatatctcagtcactgaagatgaagtacatgatttcatgtcattctttttttagctcttctgagccaaaggctcaaagagctaatgctatggccatttgtgcggtgtgcggtgcgcgtaaactttttagaatatgggccataactcaagaaccccttggccaattattgtcaaatttgtcacaaggtatccttggcccaagggctcccttttgtactaaaactggggttgtgaccctttaacaaggggagataattaggaaaatagaaacaaaagtactggttgctaaaaaatcttcttctcaagaaccactgggcagattatcaccaaacttacacaaaaggatgaggatatgctgtagattaaaatttgcacggggatttaccctggggcaaagggcatggtctcaaggtcacttcaaagttgaccaaaaattacattttattaaaatgttgatattttgcttactataaggactaggatcatcaaatcttgtcagttgatgcatctaaggacctcatatcatgttgactcaaaagtaggtcatggtgacctactttttaaattttgcggctattctttttcaaaatgatttagaggcatattttgaacaatttaaggcctatgatcatcaaactttgtcagtttatgtatcttaggtcctcgaagtatgtcaactaaaaagtaggtcaccttgacctattttttgaattttatggcttatctttctcaaaacaattaaggtcaataattcgaataccgagaggtttagaattattaaatcttgtaagatgatgcatcttggggccataaaagatatttattaaaaagtaggtcacagtgacctactttttgaacttttgcaggcatttgatttcaaagcgttttagaagcataatttggacatttttttcaatttatatgactataattaaatatttcaggtactaattggcttagaatcatcaaactttgtcagttgatgcatcttgggtcttcggagtaggtcgactaaaaagtaggtcacagtgacctacttttgaaatttatggctttaattaaatatatggggtactaattggctttgaatcatcaaactttgtcagttgatgacttttgggtcttcggagtaggtcgactaaaaagtaggtcaccatgacctacttgcaaaaatttatggctttaattaaatattttgggtactaattggcttagaatcataaaactttgtcagttcatgtgtcttgggtcctcggagtgcaacaactgaaaagtaggtcatggtgacctacttttgaaaatttatggctttaattaaatattttgggtattaattggcttagaatcattaaactttgtcagttgatgcgtcttgggtcctcggagtacaacaactgaaaagtaagtcacggtgacctacttttaaaaatttatggctttaattaaatattttgggtactttttggcttagaatcatcaaactttgtcagttgatgcatcttgggtccttggagaacgacaactgaaaagtaggtcatggtgacctacttttgaaattttatggctgtatttaatattttcaggaattatttggcttagaattgtcaaaatttgtcagttgatgcatctttggtcctcggagtagattgactgaaaagtaggtcactgtgacctacttttgaaaatttatggcttcaattaaatattttcggtacttattggcttagaatcatcaaactttgtcagtcgatgtatctttggtcctcggagtacagcaactgaaaagtaggtcaccgtgacctacttttgaaaatttatggctttaattaaatatttcaggtactaattggcttaaaatcaaactttgtcaattgatgcatcttgggtccttggagtacaacaattgaaaagtaggtcactttgacctacttataaaattttatgattataattttagaaaatattttaggtattaattggcttagaatcatcaaacttagttgatgggtcctcagacaatgacaagtgataagtgggtcaccatgaccaactctcaggtactaattggcttagaatcatcttgggttctcagagtgtgaattggaatttcaagggtttatctaaatatacaggatacttcgagggttcaaatagaagtgataggttgcacagtttatcagaagagggattcaaggcccatgggcctcttgtttttttttaacatttaactcaagcaatcaaaagctttgattttgtgtgatttgataactcaagccaacagtattgactttgtatgttatagattggcatgtttatccaagtaagttctttgggaccttggaaatacaaaatcatagggtgcttattaaatatgcactttagtagctgcaatatattttaagggttggctttacattaaaacataggtaagccacaatgaaatgtactcacatatagagtattttctgcttctgtaactttaatttaagctgtttaaaagaattatttcaagtgatatttagtgattttttttaagatgtaggaggtgaaaaaggggggggggtctcagattaaattgtcaggaattagaattttatgagaaaaagtttcaaatggggactgtttttgtgtttcagtctcaatgggtcaaaatctgtcaacattcacacttttaatcctagattgatatatatgattgatatatatgatatagctatagagaataatgctcaaactgcagaaccctgaattgttctacatatagaactcccaacttcttagtgtaattaatttagtgatactattttctagtcatgaacaaaatgaagtgcaaggcactctatgttattgtaaagtttaaaatctcagcattttaagaattgacattgtatttgatatggacaagtccatgttgaagactcttttttgtgttggtgacaagtccatgttgaagactatgttttgcgtttttgacaaatcagagacatagaaataatatggaataattatgttattttcccctgtttgcatatttttttttccacttgatgttcaatgattaattttacttttactttatcatatacatgtagataatttcccctgaataatcaagctgtcttccctttacaggtaacatgtcagtacatgtgaatgtacatgtacatgtgcaataactaatgttgtaacattgtactatatagtaacagatcattgaagctggtctcacataatgtaatttgacaataaaacgttgtatagttta
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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