2024-09-08 09:45:11, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_061178148 1804 bp mRNA linear MAM 04-DEC-2023 DEFINITION PREDICTED: Eubalaena glacialis vimentin (VIM), mRNA. ACCESSION XM_061178148 VERSION XM_061178148.1 DBLINK BioProject: PRJNA1046016 KEYWORDS RefSeq. SOURCE Eubalaena glacialis (North Atlantic right whale) ORGANISM Eubalaena glacialis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Mysticeti; Balaenidae; Eubalaena. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_083717) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_028564815.1-RS_2023_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/01/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1804 /organism="Eubalaena glacialis" /mol_type="mRNA" /isolate="mEubGla1" /db_xref="taxon:27606" /chromosome="2" /sex="male" /tissue_type="kidney" /dev_stage="calf" /geo_loc_name="USA: Amelia Island, Florida" /lat_lon="30.591667 N 81.441667 W" /collection_date="2020-03-08" /collected_by="Teri Rowles, Bob Bonde" gene 1..1804 /gene="VIM" /note="vimentin; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 69 Proteins" /db_xref="GeneID:133081788" CDS 84..1484 /gene="VIM" /codon_start=1 /product="vimentin" /protein_id="XP_061034131.1" /db_xref="GeneID:133081788" /translation="
MSSRSVSSSSYRRMFGGPGTASRPSSSRSYVTTATRTYSLGSALRPGTSRSLYASSPGGVYATRSAAVRLRSSVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQADQLTNDKARVEVERDNLSEDIMRLREKLQEEMLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQEQHVQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIALPLPNFSSLNLRETNLDSLPLVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"
polyA_site 1804 /gene="VIM" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
cccaccgcgccctcgcgcgcctctcctcccggagccagcccgcgccaccgcagccgcccagcccaccgccgccctctgcagtcatgtccagcaggtccgtgtcctcgtcctcctaccgcaggatgttcggcggccccggcaccgcgagccggccgagctccagccggagctacgtgaccacggccacccgcacctacagcctgggcagcgcgctgcgccccggcaccagccgcagcctctacgcctcgtccccgggcggcgtgtacgccacgcgctccgcggccgtgcgcctgcggagcagcgtgcccggcgtgcgcctgctgcaggactcggtggacttctcgctggccgacgccatcaacaccgagttcaagaacacccgcaccaacgagaaggtggagctgcaggagctgaacgaccgcttcgccaactacatcgacaaggtgcgcttcctggagcagcagaacaagatcctgctggccgagctcgagcagctcaagggccagggcaagtcgcgcctgggggacctctacgaggaggagatgcgcgagctgcgccggcaggcggaccagctcaccaacgacaaagcccgcgtcgaggtggagcgcgacaacctgtccgaggacatcatgcgtctccgggagaagttgcaggaggagatgcttcagagggaggaagccgagagcaccctgcagtctttcagacaggatgttgacaatgcttcactggcacgtctggacctggagcgtaaagtggaatccttgcaagaagagattgcctttttgaagaaactacatgatgaggaaatccaggagctgcaggcccagattcaagaacagcacgtccaaatcgatatggatgtttccaagcccgacctcacggctgccctgcgtgacgtccgccagcagtacgagagcgtggccgccaaaaacctccaggaggctgaggaatggtacaagtccaagttcgctgacctctccgaggctgctaaccgcaacaacgatgccctgcgccaggccaagcaggagtcgaacgagtaccgtcggcaggtgcagtccctcacctgcgaagtggacgccctcaaagggaccaacgagtctctggaacgccagatgcgtgaaatggaagagaactttgccgtggaagctgctaactaccaagacactattggccgcctgcaggacgagattcagaacatgaaggaagagatggcccgtcacctgcgtgaataccaagatctgctgaatgttaagatggctctcgacatcgagattgccacctacaggaagctgctggaaggagaggagagcaggattgctctgcctcttccaaacttttcttccctgaacctgagggaaaccaatctggattcactccctctggttgacacccattcaaaaaggacgcttctgattaagacggttgaaaccagagacggacaggttatcaacgaaacttcccagcatcacgatgatctggaataaaaactgcacgtactctatgcggcaaaatactaccagtgagaataaaaaaggaatccgtatcttaaagaaacagctttcaagtgcctttctgcagttttttcaggagtgcaagatagatttgaaataggaataagctctagttcttgagaaccaacactcgtaaaagatttagaaaaaagtttacaacataatctagtttaccgaagacgccttgtgctagaatactttttaaaaagtatttttgaataccattaaaactgcttttttccatcaagtatctgaccaacttgtttctgcttcaataaatctttggaaaactc
//
by
@meso_cacase at
DBCLS
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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