GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-07-15 06:00:26, GGRNA.v2 : RefSeq release 224 (May, 2024)

LOCUS       XM_061048466            2257 bp    mRNA    linear   VRT 20-NOV-2023
DEFINITION  PREDICTED: Labrus mixtus vimentin-related 2 (vimr2), mRNA.
ACCESSION   XM_061048466
VERSION     XM_061048466.1
DBLINK      BioProject: PRJNA1040908
KEYWORDS    RefSeq.
SOURCE      Labrus mixtus (cuckoo wrasse)
  ORGANISM  Labrus mixtus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Eupercaria; Labriformes; Labridae; Labrus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_083621) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_963584025.1-RS_2023_11
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 11/16/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2257
                     /organism="Labrus mixtus"
                     /mol_type="mRNA"
                     /db_xref="taxon:508554"
                     /chromosome="10"
     gene            1..2257
                     /gene="vimr2"
                     /note="vimentin-related 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     Proteins"
                     /db_xref="GeneID:132982150"
     CDS             176..1339
                     /gene="vimr2"
                     /codon_start=1
                     /product="desmin"
                     /protein_id="XP_060904449.1"
                     /db_xref="GeneID:132982150"
                     /translation="
MAMLRVSSYRRLFEEENWSRNGGLGCAGQYRASVRTAAVDKCDCDKLDFVAAKALNKDGLNRFIQDRTIIAALNDRLVRLIELAHCFEEENESLECQIVDLEEKLTRRPASSSITSTRFEPDYSLDAVVERLRRERDEILCETEELQKELERLMKEYEKAAQQRILLQQGRQDVAEKVDTVTAECLALREQVAIYEEQLANMEAQHSTAVQSLLHPAEQTTGAVAAIKFGSPDIAPALDVKAYYCQLAESLQFESSASSAVVPSGEGKQMEVGGAAGSTVKNLPKITDISEMKTLISELQKELAGLEKCNEELEDEVEMKRAAYMDQIAELESTIDEMQNQEADFQVQMREQCEDYKELLCEKMARDMEITAYRSLVEEEEERLCNL"
     polyA_site      2257
                     /gene="vimr2"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
cgagtacacatgaaatcattacatgctgaagttcacactataattagtctactccatgatctgtgagaggtctttcacctgagtgctacattctgattccctgtgaatataaaaacccctccttggacctgctgccaccatttgcctattgtgcagtgtgaacccctccgaagccatggccatgctcagagtgtcttcttaccgcagactgtttgaggaggagaactggagtcggaatggaggattgggttgtgcagggcagtaccgggcctccgtcaggactgcggctgttgacaagtgtgattgtgacaaactagattttgttgccgcaaaggcgctcaacaaggatggtctgaaccggttcatccaggaccgcaccatcatcgctgccctcaatgaccgcctggtcaggcttattgagctggctcattgttttgaggaggagaatgagtctcttgaatgtcagattgttgatctagaggagaagctaaccagacgaccagcctcctccagcatcacttctacgaggtttgagcctgactacagtctggatgcggtggtggagagattgcgcagagagagggatgagattctgtgtgagacggaggagctacagaaagagcttgaacgtttgatgaaagagtacgagaaggcagcacagcagagaatcctccttcagcagggacgacaagatgttgctgagaaagtggacactgtgacagcggagtgtttggcactgagggagcaagtggctatctatgaggagcagctggctaacatggaggcccagcatagcacggcagtgcagagtctgctgcatccagctgaacagacgacaggagccgtggcggctattaaatttggcagccctgacatcgctccggccttggatgtaaaggcgtactactgccagctggctgagagcctccagtttgagagttcagcctcttctgccgtcgttccgagcggtgaaggaaaacaaatggaagtgggaggtgctgcagggtcaacagtcaaaaacctgccaaagataacggacatcagtgagatgaagacgctgatatctgagctgcaaaaggagctcgctgggcttgaaaagtgtaacgaggagctggaggacgaggttgagatgaagagagctgcgtacatggaccagatcgctgagctggagagtactattgatgaaatgcaaaaccaggaggccgacttccaagtgcaaatgagggagcagtgtgaagactacaaggagctgctgtgtgagaagatggccagagacatggaaatcaccgcctacaggagtctggtggaggaagaggaggagaggctttgtaacctgtgacttgatgcttggagagttctgctggattctctgcagcacacagattacaaaatacccccaaaaaataaagagaaatgctcactcagccggcactaggatgaagcttgtggaaccaatgcagcaatttaagcagatgtaaacttatcatgacagattaataacgtctggaggcctaatctggtctgttgataacaggtcacaggcagatgaccctgagactccaagaaagatgaagctgtccaaaactggtgggaggtcgaaggcggactgcgcaatgagtgtgtacccgttaagtgtctggcagggatgtttccttaagtgggttttatctcaacttagctctctgatatgattcataaatgttttgtccgcgctttgttgaacaaatcccacacagacacacaaacacacaaacacacagacacacagacacacacacactaaagctgagcggccacctcgtccatcactcaaactttgtctgattaccggctcttaacctttgactccttcactgttaacaaacatctcgtcagctctaaactcaaagcatctcaccttcctcttgcttttacagttgtgcatacatgttggttttttacatatagttaaagtcaaaccgttcagagcactgtttgcttttcaaatggctcatgaagttgttttaccgctgctctgacaaagtgagcacctggatctttctctgagaaaagtcggtgtgatccatcatttcttctctgcaatgtcccagtatacaagggtttggtaacacattcctctataatcttttccttatattttacatgacttaaaagtgtctgtaataaatcattttttgctttttgctcttctgcacaatcatcagagtgtgccttaactttaaattcaataaaagtagttgcttgagagatcacctca
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]