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2024-07-15 04:48:28, GGRNA.v2 : RefSeq release 224 (May, 2024)

LOCUS       XM_060868403            1935 bp    mRNA    linear   VRT 08-NOV-2023
DEFINITION  PREDICTED: Tachysurus vachellii vimentin like (viml), transcript
            variant X1, mRNA.
ACCESSION   XM_060868403
VERSION     XM_060868403.1
DBLINK      BioProject: PRJNA1034989
KEYWORDS    RefSeq.
SOURCE      Tachysurus vachellii
  ORGANISM  Tachysurus vachellii
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes;
            Bagridae; Tachysurus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_083460) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030014155.1-RS_2023_11
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 11/04/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1935
                     /organism="Tachysurus vachellii"
                     /mol_type="mRNA"
                     /isolate="PV-2020"
                     /db_xref="taxon:175792"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="muscle"
                     /dev_stage="adult"
                     /country="China: Wuhan"
     gene            1..1935
                     /gene="viml"
                     /note="vimentin like; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 5 Proteins"
                     /db_xref="GeneID:132844692"
     CDS             9..1274
                     /gene="viml"
                     /codon_start=1
                     /product="vimentin like isoform X1"
                     /protein_id="XP_060724386.1"
                     /db_xref="GeneID:132844692"
                     /translation="
MSTISSTTISSYRKRYGHESRATTGARGQSDAPATLYSSSKTVGAWSGTVSAADETHDITLSGALSTDFKVSRGSNKSLNDRFVSYVEKVRLLEQRNEALRTELERYRGNGPSRLAELCAHEVADLRRHVDQLTNEKARAEVQRDNFLVDIERISAKLQEEILQREQAERSTQSFRQDVNIAALARVDLERKVESLQDEIRFLKKLHEEELREIQTQNQQQSDLTSALREIQVQYQNLASKNAHVSEEWYDSKSYLSWLKSLHVVDAELQFAELSEVANRNKETLRAAKREANEFRYQVQALNREVDALKGTNEALERQMRQTEENFALESTAYHNTISRLKENILDLKDEIARNMHEYQDLLNVKIALDIEIATYRRIMEGSVTDPVLESRTSTKVLIKTTEIRDGEVLNESTQNHEERE"
ORIGIN      
gcatcgtgatgtcgaccatctcctccaccactatctcgtcctaccgaaaacggtatggtcacgagagcagggccacgactggcgcgcgagggcaatccgacgcgccggcgacgctctactcgagcagcaagaccgtcggagcgtggagcggaaccgtgtcggcggcggatgagactcacgacatcactctgtccggggcccttagcaccgattttaaagtgtctcgcggcagcaataagtcgcttaacgaccgcttcgtcagttacgtagagaaggtgcggttgctggagcagcgcaacgaggctctgcgcacggagctggagcgctatcgtgggaacggaccctcgcgcctcgccgagctgtgcgcgcacgaagtggcggatctgcggcggcacgtggaccagctgaccaatgagaaagcgcgggcggaggtacaacgggacaacttcctcgtggacatagaacggatcagtgcgaagttgcaggaggagattctgcagagagagcaggctgagaggagcacacagagcttcagacaggatgtgaacattgccgctctagctcgagtggacctggagaggaaagtggagtcccttcaggacgaaattcgattccttaagaagctccatgaagaggagctgagagagatacagactcagaaccagcagcagtctgatctgacctccgccctcagggaaatccaggtgcagtaccagaacctggcgtccaagaatgctcacgtgtctgaggagtggtacgactccaagtcctatctgtcatggcttaaatctctccatgttgtggatgcggaattgcagttcgccgaactctctgaagtcgcaaacagaaataaagaaactctgcgagcagccaagcgagaggccaatgagttccggtaccaggttcaggctcttaaccgtgaggtggacgccctcaaggggacaaacgaggctctggagcgacagatgagacagacagaggagaactttgctctggagtccacggcttatcacaacaccatcagtcgtctgaaggaaaacatcctggacctaaaagacgagatagctcgaaacatgcacgagtaccaggacctgctcaacgttaagatagcgttggacatcgagatcgccacctacaggaggattatggaaggatctgtaacagaccctgtgctggagtccagaacctccacgaaggttctcatcaagaccactgagatcagagatggagaggtgcttaatgagtctacgcagaaccatgaagaacgggaatgacctccttcgttccctacttcgattcacacctcgtcgaaacacacaacacacaacacacagcagcatcatccgtccctgtgaggcctacagaaataaccgctgtccctcagctgctacttttccagtgctttattcactcaggagttgactgagttctttctcctgatattaacatcacaataataacgtctgagaaatcagacagattttcattatattgatctgttaagatgattattttaagcattcaactcttttttaaattaatatagtagaggaatgttagctgaattatttttcatgtagttactctataataagatcccaaatcttttggaaatgttttataagttagtgagcaaaattaagtcattttaatacagtaaatatttaacatctgggttcaaatccaatagaaagaaatcaatatataatgtgaagatgagtagaacacacgatgagtgtaacacttcctgcttcttcacattaccgattcttcatactagtaaagttttaagagggcttaggcacaatattttattcttcaatgttcaaggttctttatttgtcacatacatattacatgcagacatgtggagcgtttttccttagttcctcatacaacgttgcgagaacggacagaaacaacatcaaactaact
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]