2024-09-08 09:32:38, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_060782341 1820 bp mRNA linear VRT 03-NOV-2023 DEFINITION PREDICTED: Anolis sagrei ordinatus vimentin (VIM), mRNA. ACCESSION XM_060782341 VERSION XM_060782341.1 DBLINK BioProject: PRJNA1032142 KEYWORDS RefSeq. SOURCE Anolis sagrei ordinatus ORGANISM Anolis sagrei ordinatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Iguania; Dactyloidae; Anolis. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_026847660) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_025583915.1-RS_2023_10 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 10/30/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1820 /organism="Anolis sagrei ordinatus" /mol_type="mRNA" /isolate="Geneva1000" /sub_species="ordinatus" /specimen_voucher="MCZ R-198163" /db_xref="taxon:2962859" /chromosome="Unknown" /sex="female" /tissue_type="liver, muscle" /dev_stage="adult" /geo_loc_name="Bahamas: Conception Bank" gene 1..1820 /gene="VIM" /note="vimentin; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 87 Proteins" /db_xref="GeneID:132778888" CDS 102..1511 /gene="VIM" /codon_start=1 /product="vimentin" /protein_id="XP_060638324.1" /db_xref="GeneID:132778888" /translation="
MSTTSSQRTSSYRRMFGGSGRSSLGGGGGGGGGTRYVSSSSTRYSLGSAIRPSSVRLVSSAPGGGIYASKSVRLRSSLPAMRHLGDAGVDFSLADAINTEFKANRTNEKAELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGKGTSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLSDDILRLREKLQDEMIQREEAENNLQSFRQDVDSASLARLDLERRVESLQEEVAFMKKLHDEEIRELQAQIQDQHIQIDMDVVKPDLTAALRDVRQQYENVASKNLQEAEDWYKSKFADLSEAANRNNDALRQAKQEANEYRRQIQTLTCEVDALKGTNESLERQMREMEDNFALEAANCQDTINRLQDEVHNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISVPIPTFASLNLRETNLESIPVDTHSKRTLLIKTVETRDGQVINETSHHDDLE"
polyA_site 1820 /gene="VIM" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
ggcccgcagcgcctttcttgccttgcgcacctgcggcagaagccttccacgccgtctcctcctcctcctccactccacacacttttgggattacaacaaccatgagcaccacgagcagccagcgcacctcgtcttaccgccgcatgttcgggggctccggccggtccagcctcgggggtggtggaggcggcggcggcggcacccgctatgtctcctcttcctcgacgcgctactccctgggcagcgccatccggcccagcagcgtgcgcctggtctcctcggcgcctggcggcgggatctacgcctccaagtcggtgcgcttgcggtccagcctgcccgcgatgcgccacttgggcgacgccggcgtggacttctccctggccgacgccatcaacacggagttcaaggccaaccgcaccaacgagaaggccgagctgcaggagctcaacgaccgcttcgccaactacatcgacaaggtgcgcttcctggagcagcagaacaagatcctgctggcggagctggagcagctcaagggcaaaggcacctcccgcctgggagacctctacgaggaggagatgcgcgagctccgccgccaggtcgaccagctcaccaacgacaaggcgcgcgtggaagtggagcgggacaacctcagcgacgacatcctgcgcctccgggagaaacttcaagatgagatgattcagagagaagaagctgaaaacaatttgcagtctttcagacaggatgttgacagtgcctccttggcccgtctggatcttgaacgcagagttgaatccttgcaagaagaggtggctttcatgaagaaacttcatgatgaggaaatccgtgagctgcaggcccaaattcaggaccaacatatccagattgatatggatgttgtcaagcctgatctcactgctgccctgcgggatgtgcgccaacagtatgaaaatgtggcttccaagaaccttcaagaagctgaagactggtacaagtccaaatttgcagatctgtctgaagcagccaacaggaacaacgatgccctgcgccaggccaaacaagaagctaatgagtaccgcaggcaaatccagactctcacctgtgaagtggatgcactcaaaggaaccaatgaatctctggagcgtcaaatgcgcgagatggaggataactttgctcttgaagctgctaactgccaagacactattaatcgtctccaggacgaagttcataacatgaaggaagaaatggcccgccaccttcgcgagtaccaagacctgctgaatgtaaagatggctcttgatattgagattgccacttacaggaaactgctggagggagaagagagcagaatttctgtacctattccaacctttgcttccctgaacctgagagaaacaaaccttgagtccattcctgtggacactcactcaaagagaacactgcttatcaagactgttgaaactagagatggacaagttatcaatgaaacttctcaccacgatgatctggagtgaagagaggccagcccatcttgaaatcaaacccttaccagcaagactaaaaagagaaaccgctttcaagtgcctttctgcagtttttccaagagcgcaaggtggttatgctaggagaactaggtcttagatcttgcaaaactgactctctcttgaaggatttagacgagcttacaaaaaagggagtctagttaagataacaatatattgtgctgcaatactgttttttaagtttctgaattgaataaaatggcttttttcagcacagtatgagcaacccctcactgcttcaataaacatttgggaaatggc
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]