LOCUS       XM_060659547            1889 bp    mRNA    linear   MAM 01-NOV-2023
DEFINITION  PREDICTED: Panthera onca vimentin (VIM), mRNA.
ACCESSION   XM_060659547
VERSION     XM_060659547.1
DBLINK      BioProject: PRJNA1028623
KEYWORDS    RefSeq.
SOURCE      Panthera onca (jaguar)
  ORGANISM  Panthera onca
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae;
            Pantherinae; Panthera.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_083306) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_028533385.1-RS_2023_10
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 10/19/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1889
                     /organism="Panthera onca"
                     /mol_type="mRNA"
                     /isolate="Sample0147"
                     /db_xref="taxon:9690"
                     /chromosome="12"
                     /sex="female"
                     /tissue_type="blood: Jugular"
                     /collection_date="2015-07-29"
                     /collected_by="Julia Jones, Liz McCrae"
     gene            1..1889
                     /gene="VIM"
                     /note="vimentin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 38 Proteins"
                     /db_xref="GeneID:132695245"
     CDS             161..1561
                     /gene="VIM"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="XP_060515530.1"
                     /db_xref="GeneID:132695245"
                     /translation="

MSTRSVSSSSYRRMFGGPGTGSRPSSSRSYVTTSTRTYSLGSALRPSTSRSLYASSPGGPYATRTSAVRLRSSVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQDQHVQIDVDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIALPLPNFSSLNLRETNLDSLPLVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"

     polyA_site      1889
                     /gene="VIM"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

cggcccggcccggtcctctgccactctcgctccgggatcccccgcgccagagacgcagcagcgctcccaccgcccacacccaccgcgccctcgctcgcctgtcctccccgagccagtccgcgccgccgcagccgcccagcccaccgccaccgtctcagccatgtccaccaggtctgtgtcctcgtcctcctaccgcaggatgttcggcggccccggcaccgggagccggccgagctccagccggagctacgtgaccacgtccacccgcacctacagcctgggcagcgcgttgcgccccagcaccagccgcagcctgtacgcctcgtccccgggcggcccgtacgccacgcgcacctcggcggtgcgcctgcggagcagtgtgcccggtgtgcgtctgctgcaggactcggtggacttctcgctggccgatgccatcaacaccgagttcaagaacacccgcaccaacgagaaggtggagctgcaggagctgaacgaccgcttcgccaactacatcgacaaggtgcgcttcctggagcagcagaacaagatcctgctggccgagctcgagcagctcaagggccagggcaagtcgcgcctgggggacctctacgaggaggagatgcgggagctgcgccggcaggtggaccagctcaccaacgacaaggcccgcgtcgaggtggagcgcgacaacctggccgaggacatcatgcggctccgggagaagttgcaggaggagatgcttcagagagaggaagccgagagcaccctgcaatctttcagacaggatgttgacaacgcttctttggcacgtcttgaccttgagcgcaaagtggaatccttgcaggaagagattgcctttttgaagaaactacacgatgaggaaatccaggagctacaggctcagatccaggaccagcacgtccaaatcgacgtggatgtttccaagcctgacctcaccgctgccctgcgggatgtacgccagcaatatgaaagcgtggctgccaagaaccttcaggaggccgaagaatggtacaagtccaagtttgctgacctctctgaggctgctaaccggaacaatgatgccctgcgccaggcgaagcaggaatcaaatgagtaccggagacaggtccagtccctcacctgcgaagtggacgccctcaaagggactaacgagtctctggaacgccagatgcgtgaaatggaagagaactttgccgtcgaagctgctaactaccaagacactattggccgcctgcaggatgagattcagaacatgaaggaggaaatggctcgtcaccttcgcgaataccaagacctgctgaatgttaagatggctcttgacattgagatcgccacctacaggaagctgctggaaggcgaggagagcaggatcgctctgcctcttcccaacttttcttccctgaacctgagggaaaccaatctggattcacttcctctggttgacactcactcaaaaagaacacttctgattaagacggtcgaaaccagagatggacaggttatcaatgaaacttctcagcatcacgatgaccttgagtgaagattgcacagactcggtgcagcaatatattaccagcaagaataaaaaaaaaaaaaaagaaatccatatcttaaagaaacagctttcaagtgcctttctgcagtttttcaggagcgcaagatagatttggaataggaataacctttagttcttaagaaccaacactcttaaaagatttagagaaaagtttacaaacataatctagtttacgaagaaaacttgtgctaggatactttttaaaaagtatttttgaataccattaaaactgcttttttccaacaagtgtctgaccaacttgtttctgcttcaataaatctttggaaaactc

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