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2024-07-23 23:29:25, GGRNA.v2 : RefSeq release 224 (May, 2024)

LOCUS       XM_060248418            1827 bp    mRNA    linear   VRT 19-OCT-2023
DEFINITION  PREDICTED: Heteronotia binoei vimentin (VIM), mRNA.
ACCESSION   XM_060248418
VERSION     XM_060248418.1
DBLINK      BioProject: PRJNA1026920
KEYWORDS    RefSeq.
SOURCE      Heteronotia binoei (prickly gecko)
  ORGANISM  Heteronotia binoei
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Lepidosauria; Squamata; Bifurcata; Gekkota; Gekkonidae; Gekkoninae;
            Heteronotia.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_083232) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_032191835.1-RS_2023_10
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 10/12/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1827
                     /organism="Heteronotia binoei"
                     /mol_type="mRNA"
                     /isolate="CCM8104"
                     /db_xref="taxon:13085"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="tail"
                     /dev_stage="adult"
                     /ecotype="False Entrance Well"
                     /country="Australia: WA"
                     /collection_date="2022-05-26"
     gene            1..1827
                     /gene="VIM"
                     /note="vimentin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 394 long SRA reads, 78
                     Proteins"
                     /db_xref="GeneID:132578424"
     CDS             111..1514
                     /gene="VIM"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="XP_060104401.1"
                     /db_xref="GeneID:132578424"
                     /translation="
MSFTTTNRSSSYRRMFGGGSRPSTSGSTRHVTSSSRYSLGSAIRPSSVRLVSSAPGGGGVYATRASSVRLRSSFPQQVRLVSDAGVDFSLADAINTEFKANRTNEKAELQELNDRFANYIDKVRFLEQQNKILSAELDQLRGKGTSRLGDLYDEEMRELRRQVDQLTNDKARVEVERDNLADDILRLREKLQDEILQREEAENTLQSFRQDVDSASLARLDLERKVESLQEEVVFLKKLHDEEIRELQVQIQEQHIQVDMDVAKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAASRNNDALRQAKQEANEYRRQIQSLTCEVDALKGTNESLERQMREMEENFSLECANYQDNIARLQEEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISMPLPTFASLNLRETNLESVPIVDTHSKRTLLIKTVETRDGQVINETSHHDDLE"
     polyA_site      1827
                     /gene="VIM"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
aactctccagcgcctcttcggctccagcagcgcgcctcggctgaagtcttcgaagtcgccgccgccgccgccacctcgggaccgcccgtccccctcggattacgcccgccatgagcttcaccacgaccaaccgcagctcctcttaccgccgcatgttcgggggcggcagccggcccagcacctcgggcagcacccgccatgtcacctcctctagccgctactctctgggcagcgccatccggcccagcagcgtgcgcctggtctcctcggcgcccggcggcggcggcgtctacgccacccgggcgtcctcggtgcggttgcgcagcagcttcccgcagcaggtgcgcctcgtgtccgacgccggcgtggacttctccctggccgacgccatcaacacggagttcaaggccaaccgcaccaacgagaaggccgagctgcaggagctcaacgaccgcttcgccaactacatcgacaaggtgcgcttcctcgagcagcagaacaagatcctgagcgccgagctcgaccagctgcgcggcaaaggcacctcccgcctgggcgacctctacgacgaggagatgcgcgagctccgccgccaggtggaccagctcaccaacgacaaggcccgcgtggaggtcgagagggacaacctggccgacgacatcctgcgcctccgagagaaacttcaagatgagatacttcagagagaagaagctgaaaacactttgcagtctttcagacaggatgttgacagtgcctctctggcacgtctggatctagaacgcaaagttgagtcactgcaagaagaggttgtcttcttgaagaagcttcatgatgaggaaatccgtgagcttcaggtccagatccaggaacaacatatccaggttgatatggatgttgctaaacctgatctgactgctgccctgcgtgatgtgcgtcagcagtatgaaagtgttgctgctaagaatcttcaagaagctgaagagtggtacaaatccaaatttgcagatctctctgaagcagctagcaggaataatgatgccctgcgccaggccaaacaagaagcaaatgaataccgcaggcaaattcagtctctcacctgtgaagtggatgcacttaaaggaactaatgaatccctggaacgccagatgcgtgagatggaagagaacttctctcttgaatgtgctaactatcaagacaatatcgcccgtctccaggaggagatccaaaacatgaaggaagaaatggctcgccacctccgcgagtaccaggatctgctgaatgtaaagatggctctagatattgagattgccacctacaggaaactgctggagggagaggagagcagaattagtatgcctcttcctacttttgcttccctgaacctgagggaaacaaaccttgagtcagtcccaatcgtggacacccattcaaagaggacactcctcatcaagactgttgaaactagagatggacaggttatcaatgaaacttctcaccacgatgacctggagtaaaggaacaacagcacatcactcttgtgcagaaatgaagccttaccagcaagacttaaaagacaaacagctttcaagtgcctttctgcagtcttttccaagagcgcaagatggttatgctagaagagataggtcttagatcttgcaagctgactctcttggtggtttagaagagcttacaaaaaggagtctagttcactgatagcaatatcctgtgctgcaatactgtttttaagtttctgaattgaataaaacttctttttccagcacagtatgagcaacctgtcactgcttcaataaacacttgggaaatggc
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]