2024-09-08 09:39:39, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_060248418 1827 bp mRNA linear VRT 19-OCT-2023 DEFINITION PREDICTED: Heteronotia binoei vimentin (VIM), mRNA. ACCESSION XM_060248418 VERSION XM_060248418.1 DBLINK BioProject: PRJNA1026920 KEYWORDS RefSeq. SOURCE Heteronotia binoei (prickly gecko) ORGANISM Heteronotia binoei Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Gekkota; Gekkonidae; Gekkoninae; Heteronotia. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_083232) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_032191835.1-RS_2023_10 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 10/12/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1827 /organism="Heteronotia binoei" /mol_type="mRNA" /isolate="CCM8104" /db_xref="taxon:13085" /chromosome="10" /sex="female" /tissue_type="tail" /dev_stage="adult" /ecotype="False Entrance Well" /geo_loc_name="Australia: WA" /collection_date="2022-05-26" gene 1..1827 /gene="VIM" /note="vimentin; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 394 long SRA reads, 78 Proteins" /db_xref="GeneID:132578424" CDS 111..1514 /gene="VIM" /codon_start=1 /product="vimentin" /protein_id="XP_060104401.1" /db_xref="GeneID:132578424" /translation="
MSFTTTNRSSSYRRMFGGGSRPSTSGSTRHVTSSSRYSLGSAIRPSSVRLVSSAPGGGGVYATRASSVRLRSSFPQQVRLVSDAGVDFSLADAINTEFKANRTNEKAELQELNDRFANYIDKVRFLEQQNKILSAELDQLRGKGTSRLGDLYDEEMRELRRQVDQLTNDKARVEVERDNLADDILRLREKLQDEILQREEAENTLQSFRQDVDSASLARLDLERKVESLQEEVVFLKKLHDEEIRELQVQIQEQHIQVDMDVAKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAASRNNDALRQAKQEANEYRRQIQSLTCEVDALKGTNESLERQMREMEENFSLECANYQDNIARLQEEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISMPLPTFASLNLRETNLESVPIVDTHSKRTLLIKTVETRDGQVINETSHHDDLE"
polyA_site 1827 /gene="VIM" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
aactctccagcgcctcttcggctccagcagcgcgcctcggctgaagtcttcgaagtcgccgccgccgccgccacctcgggaccgcccgtccccctcggattacgcccgccatgagcttcaccacgaccaaccgcagctcctcttaccgccgcatgttcgggggcggcagccggcccagcacctcgggcagcacccgccatgtcacctcctctagccgctactctctgggcagcgccatccggcccagcagcgtgcgcctggtctcctcggcgcccggcggcggcggcgtctacgccacccgggcgtcctcggtgcggttgcgcagcagcttcccgcagcaggtgcgcctcgtgtccgacgccggcgtggacttctccctggccgacgccatcaacacggagttcaaggccaaccgcaccaacgagaaggccgagctgcaggagctcaacgaccgcttcgccaactacatcgacaaggtgcgcttcctcgagcagcagaacaagatcctgagcgccgagctcgaccagctgcgcggcaaaggcacctcccgcctgggcgacctctacgacgaggagatgcgcgagctccgccgccaggtggaccagctcaccaacgacaaggcccgcgtggaggtcgagagggacaacctggccgacgacatcctgcgcctccgagagaaacttcaagatgagatacttcagagagaagaagctgaaaacactttgcagtctttcagacaggatgttgacagtgcctctctggcacgtctggatctagaacgcaaagttgagtcactgcaagaagaggttgtcttcttgaagaagcttcatgatgaggaaatccgtgagcttcaggtccagatccaggaacaacatatccaggttgatatggatgttgctaaacctgatctgactgctgccctgcgtgatgtgcgtcagcagtatgaaagtgttgctgctaagaatcttcaagaagctgaagagtggtacaaatccaaatttgcagatctctctgaagcagctagcaggaataatgatgccctgcgccaggccaaacaagaagcaaatgaataccgcaggcaaattcagtctctcacctgtgaagtggatgcacttaaaggaactaatgaatccctggaacgccagatgcgtgagatggaagagaacttctctcttgaatgtgctaactatcaagacaatatcgcccgtctccaggaggagatccaaaacatgaaggaagaaatggctcgccacctccgcgagtaccaggatctgctgaatgtaaagatggctctagatattgagattgccacctacaggaaactgctggagggagaggagagcagaattagtatgcctcttcctacttttgcttccctgaacctgagggaaacaaaccttgagtcagtcccaatcgtggacacccattcaaagaggacactcctcatcaagactgttgaaactagagatggacaggttatcaatgaaacttctcaccacgatgacctggagtaaaggaacaacagcacatcactcttgtgcagaaatgaagccttaccagcaagacttaaaagacaaacagctttcaagtgcctttctgcagtcttttccaagagcgcaagatggttatgctagaagagataggtcttagatcttgcaagctgactctcttggtggtttagaagagcttacaaaaaggagtctagttcactgatagcaatatcctgtgctgcaatactgtttttaagtttctgaattgaataaaacttctttttccagcacagtatgagcaacctgtcactgcttcaataaacacttgggaaatggc
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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