2024-09-14 06:17:20, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_060162650 1880 bp mRNA linear MAM 07-OCT-2023 DEFINITION PREDICTED: Lagenorhynchus albirostris vimentin (VIM), mRNA. ACCESSION XM_060162650 VERSION XM_060162650.1 DBLINK BioProject: PRJNA1023191 KEYWORDS RefSeq. SOURCE Lagenorhynchus albirostris (white-beaked dolphin) ORGANISM Lagenorhynchus albirostris Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Lagenorhynchus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_083095) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_949774975.1-RS_2023_10 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 10/05/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1880 /organism="Lagenorhynchus albirostris" /mol_type="mRNA" /db_xref="taxon:27610" /chromosome="1" gene 1..1880 /gene="VIM" /note="vimentin; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 71 Proteins" /db_xref="GeneID:132527262" CDS 160..1560 /gene="VIM" /codon_start=1 /product="vimentin" /protein_id="XP_060018633.1" /db_xref="GeneID:132527262" /translation="
MSSRSVSSSSYRRMFGGPGTASRPSSSRSYVTTATRTYSLGSALRPGTSRSLYASSPGGVYATRSAAMRLRSSVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLSEDIMRLREKLQEEMLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQEQHVQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFSVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIALPLPNFSSLNLRETNLDSLPLVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"
polyA_site 1880 /gene="VIM" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
ggcggggtcccgtcctctgccactctcgctccgggctctccgctccagagactcagcagcgctccctttgcccacacccaccgcgccctcgcgcgcctctcctcccggagctagcccgcgccaccgcagccgcccagcccaccgccgccctctgcagtcatgtccagcaggtccgtgtcctcgtcctcctaccgcaggatgttcggcggccctggcaccgcgagccggccgagctccagccggagctacgtgaccacggccacccgcacctacagcctgggcagcgcgctgcgccccggcaccagccgcagcctctacgcctcgtccccgggcggcgtgtacgccacgcgctccgcggccatgcgcctgcggagcagcgtgcccggcgtgcgcctgctgcaggactcggtggacttctcgctggccgacgccatcaacaccgagttcaagaacacccgcaccaacgagaaggtggagctgcaggagctgaacgaccgcttcgccaactacatcgacaaggtgcgcttcctggagcagcagaacaagatcctgctggccgagctcgagcagctcaagggccagggcaagtcgcgcctgggggacctctacgaggaggagatgcgagagctgcgccggcaggtggaccaactcaccaacgacaaagcccgcgtcgaggtggagcgcgacaacctgtccgaggacatcatgcgtctccgggagaagttgcaggaggagatgcttcagagggaggaagccgagagcaccctgcagtctttcagacaggatgttgacaatgcttctttggcacgtctggacctggagcgtaaagtggaatccttgcaagaagagattgcctttttgaagaaactacacgatgaggaaatccaggagctgcaggcccagattcaagaacagcacgtccagatcgatatggatgtttccaagcccgacctcacggctgccctgcgtgacgtccgccagcagtacgagagcgtggccgccaagaacctccaggaggctgaggagtggtacaagtccaagttcgctgacctctccgaggctgctaaccgcaacaacgatgccctgcgccaggccaagcaggagtcgaacgagtaccgtcggcaggtgcagtccctcacctgcgaggtggatgccctcaaaggcaccaacgagtctctggaacgccagatgcgtgaaatggaagagaacttttccgtggaagctgctaactaccaagacactattggccgcctgcaggacgagattcagaacatgaaggaagagatggctcgtcacctgcgtgaataccaagatctgctgaatgttaagatggctctcgacatcgagattgccacctacaggaagctgctggaaggagaggagagcaggattgctctgcctcttccaaacttttcttccctgaacctgagggaaaccaatctggattcactccctctggttgacacccattcaaaaaggacacttctgattaagacggttgaaaccagagatggacaggtcatcaacgaaacttcccagcatcacgatgacctggaataaaaactgcacgtactccatgcggcaaaatactaccagtgagaataaaaaagaaatccgtatcttaaagaaacagctttcaagtgcctttctgcagttttttcaggagtgcaagatagatttgaaataggaataagctctagttcttgagaaccaacactcgtaaaagatttagaaaaaagtttacaacataatctagtttaccgaagacgccttgtgctagaatactttttaagaagtatttttgaataccattaaaactgcttttttccatcacgtatctgaccaacttgtttctgcttcaataaatctttggaaaactc
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@meso_cacase at
DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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