2024-09-08 09:29:43, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_060044855 1486 bp mRNA linear VRT 03-OCT-2023 DEFINITION PREDICTED: Gadus macrocephalus vimentin (vim), transcript variant X3, mRNA. ACCESSION XM_060044855 VERSION XM_060044855.1 DBLINK BioProject: PRJNA1018584 KEYWORDS RefSeq. SOURCE Gadus macrocephalus (Pacific cod) ORGANISM Gadus macrocephalus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei; Gadidae; Gadus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_082404) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_031168955.1-RS_2023_09 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 09/26/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1486 /organism="Gadus macrocephalus" /mol_type="mRNA" /db_xref="taxon:80720" /chromosome="23" gene 1..1486 /gene="vim" /note="vimentin; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 42 Proteins" /db_xref="GeneID:132452301" CDS 174..1457 /gene="vim" /codon_start=1 /product="vimentin isoform X2" /protein_id="XP_059900838.1" /db_xref="GeneID:132452301" /translation="
MMSNRSSNSSRPIAASSYSRMFSAERPAASRTSYSSRQYSSPAVQRSTARSSYSVSSAPQQGMYASKNVRLRSAHMPRLSSDAVDFSLSEAINTEFKTNRTNEKAQMQHLNDRFASYIDKVRYLEQQNKMLSTELEQLKGQGKSRIGDLYEDEMRELRKQVDQLTNEKSQVEVDRDNLGDDVERLRQKLQEEMLQKEDAEHNLQTFRQDVDNASLARLDLERKIESLQEEIMFLRKIHEEELADLQAQLQDQHVQIEMDVVKPDLTAALRDVRQQYESLATKNLHESEEWYKSKFADLADQQQRNGDSLRLSKTEANEYRRQVQALTCEVDSLRGTNESMERQMRELEDNFGAEAGGYQDNIVQLEDDIRNMKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRNHDGEPAYGRPHQEGRD"
polyA_site 1486 /gene="vim" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
agggaggggactataaaaaccaagtggaagtcaggacagagctctcactggtcttggaatatcagttgctggagcgcctgcagactgtactatcctacccatcgcaactttgagcccactttgaggtgttataaaaagggcgtactccaggagtcggattgaaaaccgcaaaaatgatgagtaatcggtcaagcaacagcagtaggcctatcgccgcctcctcctactccaggatgttcagcgcggagcgccccgccgcgtcgcgcacctcctactccagccgccagtactccagcccggcggtgcagcgctccaccgcccgctcgtcctacagcgtctcctcggcgccccagcagggcatgtacgcctccaagaatgtccgtctgcgcagcgcccacatgccgcgtctctcatcggacgccgtggacttctcgctgtccgaggccatcaacacggagttcaagaccaacaggaccaacgagaaggcgcagatgcagcacctcaacgaccgcttcgcaagctacatcgacaaggtgcgctacctggagcagcagaacaagatgctgagtaccgagctggagcagctcaagggccagggcaagtcccgcatcggggatctgtacgaggacgagatgcgtgagctgcgcaagcaggtggaccagctgaccaacgagaagtcgcaggtggaggtggaccgcgacaacttgggcgacgatgtcgaacgcctgcgacaaaagctacaggaggagatgctgcagaaggaggacgcagagcacaacctccagacctttagacaggatgtggacaatgcctctctggcccgtctagaccttgagaggaagattgagtctcttcaggaggagatcatgttcctcaggaaaatccatgaagaggagctggccgacctgcaggcccagctccaggaccagcacgtccagatcgagatggacgtggtcaagcccgacctcaccgccgccctgcgggacgtccggcagcagtacgagtccctggccaccaagaacctgcacgagtccgaggaatggtacaagtctaagtttgcagacctcgccgaccagcagcaacgcaacggagactccctccggctgtccaagacggaggccaacgagtacagacgccaggtgcaggcgctcacctgcgaggtggactccctcagaggaaccaatgaatccatggaacgccagatgcgcgagctggaggacaacttcggagcagaggctggcggttaccaggacaacatcgtccagctggaggacgacatccgcaacatgaaagacgagatggcccgccacctcagagagtaccaggacctgctgaacgtcaagatggccctggacatcgagatcgccacctaccgcaagctgctggagggagaggagagcagaaaccatgatggagagccggcctatggtagaccacaccaagagggtcgtgattaagaccatcgagacccgagatggacacgtaa
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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