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2024-07-15 05:13:49, GGRNA.v2 : RefSeq release 224 (May, 2024)

LOCUS       XM_059818293            1747 bp    mRNA    linear   VRT 29-SEP-2023
DEFINITION  PREDICTED: Gavia stellata vimentin (VIM), mRNA.
ACCESSION   XM_059818293
VERSION     XM_059818293.1
DBLINK      BioProject: PRJNA1021185
KEYWORDS    RefSeq.
SOURCE      Gavia stellata (red-throated loon)
  ORGANISM  Gavia stellata
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Gaviiformes; Gaviidae; Gavia.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_082599) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030936135.1-RS_2023_09
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 09/26/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1747
                     /organism="Gavia stellata"
                     /mol_type="mRNA"
                     /isolate="bGavSte3"
                     /db_xref="taxon:37040"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="muscle"
                     /dev_stage="adult"
                     /country="Greenland"
                     /lat_lon="71.7069 N 42.6043 W"
                     /collection_date="2019-08-01"
                     /collected_by="Mikkel Sinding"
     gene            1..1747
                     /gene="VIM"
                     /note="vimentin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 39 Proteins"
                     /db_xref="GeneID:104265090"
     CDS             42..1421
                     /gene="VIM"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="XP_059674276.1"
                     /db_xref="GeneID:104265090"
                     /translation="
MSISTKNSSYRRMFGGGSRPSTGTRYITSSSRYSLGSSLRPSTARYVSASPGGMYATKTTSVRLRSSMPPMRLHDSVDFSLADAINTEFKANRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGKGTSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLADDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIVFLKKLHDEEIRELQAQLQEQHIQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQEANEYRRQIQSLTCEVDALKGSNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRINMPIPTFASLNLRETNIESQPMVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"
     polyA_site      1747
                     /gene="VIM"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
ccgccccgctcccggattacaaagccggcaccgtcgccgccatgagcatcagcaccaagaactcctcgtaccgccgcatgttcggcgggggcagccgccccagcaccggcacccgctacatcacctccagcagccgctactcgctgggcagctccctgcggcccagcaccgcccggtacgtgtccgcctcgcccggcggcatgtacgccaccaagacgacgtcggtgcggctgcggagcagcatgccgcccatgcggctccacgactccgtggacttctccctggccgacgccatcaacacggagttcaaggcgaaccgcaccaacgagaaggtggagctgcaggagctcaacgaccgcttcgccaactacatcgacaaggtgcgcttcctggagcagcagaacaagatcctgctggccgagctggagcagctcaagggcaagggcacgtcccgcctgggcgacctctacgaggaggagatgcgggagctgcgccggcaggtggaccagctcaccaacgacaaggcacgcgtggaagtggagcgggacaacctcgccgacgacatcatgcggctgagggagaagttgcaagaggagatgctgcagcgggaggaggccgagaacaccctgcagtccttcagacaggatgttgacaatgcctctctggcacgtcttgatcttgagcgcaaagttgagtccctgcaagaggagattgtctttttgaagaagcttcatgatgaggaaatccgagaactgcaggcccaactccaggaacagcacatccaaatcgatatggatgtttctaagcctgatcttactgctgccctgcgtgacgttcgccaacagtatgaaagtgttgctgctaagaatcttcaggaagctgaagagtggtacaagtccaaatttgcagatctctctgaagctgctaataggaacaacgatgccctgcgccaggccaaacaagaagctaatgaataccgcagacagattcagtctctcacctgcgaagttgatgcccttaagggaagcaatgaatccctggagcgccagatgcgtgaaatggaggagaattttgctgttgaagctgctaactaccaagacactattggccgtctgcaggatgagattcagaacatgaaggaagaaatggctcgccatctccgtgagtaccaggacctgctgaatgtaaagatggctcttgatattgagattgccacctacaggaaactgctggagggtgaagagagcaggattaacatgcctattccaacctttgcttctctgaacctgagagaaaccaacattgagtctcagccgatggttgacactcactcaaagaggacacttctaattaagaccgttgaaactagagatggacaggttattaatgaaacttcccagcatcatgatgacttagagtaaagctgaagtgaagatgcttacttattaatgcaggaaaaattcttaccagcaagatttaaaaagtccatgtcttaaaggaagaaacagctttcaagtgcctttctgcagtttttccatgagcgcaagactattatgctaggaaataggtcttagatcttgcaaactgactctccctgaaggattagagtttacaatggagtctagtttacaaatagcaatatcttgtgctgcaatactgtttttaagtatctgaattcaataaaactgctttttccagcacggtatgagcaacctgtcgctacttcaataaatccttggaaaatggc
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]