2024-09-08 09:38:06, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_059818293 1747 bp mRNA linear VRT 29-SEP-2023 DEFINITION PREDICTED: Gavia stellata vimentin (VIM), mRNA. ACCESSION XM_059818293 VERSION XM_059818293.1 DBLINK BioProject: PRJNA1021185 KEYWORDS RefSeq. SOURCE Gavia stellata (red-throated loon) ORGANISM Gavia stellata Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Gaviiformes; Gaviidae; Gavia. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_082599) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030936135.1-RS_2023_09 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 09/26/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1747 /organism="Gavia stellata" /mol_type="mRNA" /isolate="bGavSte3" /db_xref="taxon:37040" /chromosome="6" /sex="male" /tissue_type="muscle" /dev_stage="adult" /geo_loc_name="Greenland" /lat_lon="71.7069 N 42.6043 W" /collection_date="2019-08-01" /collected_by="Mikkel Sinding" gene 1..1747 /gene="VIM" /note="vimentin; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 39 Proteins" /db_xref="GeneID:104265090" CDS 42..1421 /gene="VIM" /codon_start=1 /product="vimentin" /protein_id="XP_059674276.1" /db_xref="GeneID:104265090" /translation="
MSISTKNSSYRRMFGGGSRPSTGTRYITSSSRYSLGSSLRPSTARYVSASPGGMYATKTTSVRLRSSMPPMRLHDSVDFSLADAINTEFKANRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGKGTSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLADDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIVFLKKLHDEEIRELQAQLQEQHIQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQEANEYRRQIQSLTCEVDALKGSNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRINMPIPTFASLNLRETNIESQPMVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"
polyA_site 1747 /gene="VIM" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
ccgccccgctcccggattacaaagccggcaccgtcgccgccatgagcatcagcaccaagaactcctcgtaccgccgcatgttcggcgggggcagccgccccagcaccggcacccgctacatcacctccagcagccgctactcgctgggcagctccctgcggcccagcaccgcccggtacgtgtccgcctcgcccggcggcatgtacgccaccaagacgacgtcggtgcggctgcggagcagcatgccgcccatgcggctccacgactccgtggacttctccctggccgacgccatcaacacggagttcaaggcgaaccgcaccaacgagaaggtggagctgcaggagctcaacgaccgcttcgccaactacatcgacaaggtgcgcttcctggagcagcagaacaagatcctgctggccgagctggagcagctcaagggcaagggcacgtcccgcctgggcgacctctacgaggaggagatgcgggagctgcgccggcaggtggaccagctcaccaacgacaaggcacgcgtggaagtggagcgggacaacctcgccgacgacatcatgcggctgagggagaagttgcaagaggagatgctgcagcgggaggaggccgagaacaccctgcagtccttcagacaggatgttgacaatgcctctctggcacgtcttgatcttgagcgcaaagttgagtccctgcaagaggagattgtctttttgaagaagcttcatgatgaggaaatccgagaactgcaggcccaactccaggaacagcacatccaaatcgatatggatgtttctaagcctgatcttactgctgccctgcgtgacgttcgccaacagtatgaaagtgttgctgctaagaatcttcaggaagctgaagagtggtacaagtccaaatttgcagatctctctgaagctgctaataggaacaacgatgccctgcgccaggccaaacaagaagctaatgaataccgcagacagattcagtctctcacctgcgaagttgatgcccttaagggaagcaatgaatccctggagcgccagatgcgtgaaatggaggagaattttgctgttgaagctgctaactaccaagacactattggccgtctgcaggatgagattcagaacatgaaggaagaaatggctcgccatctccgtgagtaccaggacctgctgaatgtaaagatggctcttgatattgagattgccacctacaggaaactgctggagggtgaagagagcaggattaacatgcctattccaacctttgcttctctgaacctgagagaaaccaacattgagtctcagccgatggttgacactcactcaaagaggacacttctaattaagaccgttgaaactagagatggacaggttattaatgaaacttcccagcatcatgatgacttagagtaaagctgaagtgaagatgcttacttattaatgcaggaaaaattcttaccagcaagatttaaaaagtccatgtcttaaaggaagaaacagctttcaagtgcctttctgcagtttttccatgagcgcaagactattatgctaggaaataggtcttagatcttgcaaactgactctccctgaaggattagagtttacaatggagtctagtttacaaatagcaatatcttgtgctgcaatactgtttttaagtatctgaattcaataaaactgctttttccagcacggtatgagcaacctgtcgctacttcaataaatccttggaaaatggc
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]